Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1013 ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCTTTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTACTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACGGATCAAATCAATGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGTATGA 681 39.5 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQINEEEITTVGIGITDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGV 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16351858 16355900 + CaPI482276_08g010130.1 Cam08g1013 133064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1013 226 CDD REC_typeA_ARR 16 151 - -
Cam08g1013 226 Gene3D - 15 224 - -
Cam08g1013 226 SMART REC_2 14 152 IPR001789 GO:0000160(InterPro)
Cam08g1013 226 ProSiteProfiles Response regulatory domain profile. 15 156 IPR001789 GO:0000160(InterPro)
Cam08g1013 226 MobiDBLite consensus disorder prediction 206 226 - -
Cam08g1013 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 205 IPR045279 GO:0009736(InterPro)
Cam08g1013 226 SUPERFAMILY CheY-like 14 150 IPR011006 -
Cam08g1013 226 MobiDBLite consensus disorder prediction 189 226 - -
Cam08g1013 226 Pfam Response regulator receiver domain 66 149 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1013 Cam-Chr8:16351858 Cam10g1583 Cam-Chr10:29562291 3.60E-39 dispersed
Cam08g1013 Cam-Chr8:16351858 Cam06g1813 Cam-Chr6:29205961 4.20E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52393 PF00072 Response_reg 1.70E-15 CL0304 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1013 K14492 - csv:101216267 326.635