Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam08g1017 | ATGTTTCACTCCAATTTTCAAAACCATCTTTCACAACCTGAGTTAGCAGTGAGTATTGAGTATGGTACCACCGAAGTACTAAATATGTTGGCTATCTGGCATTGGATGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCAAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTTGGTTGCTTTGGTTTTAGTGCATTTCATGTAACTGGATTGTATGGTCCAAGAATCTGGATATCCGATCCTTATGGATTAATCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTCTAGCAGGCCAGGTTGATCCTAAACAAAAGGAGAGAGGCCGCAAAAAAGGAAAGCCCCAAATGGCCGAGCCTTTGTCCCTACAACTGACACTTCCATCGCATTCATCCCCCATTGCTGCTGCTTCGAAAAACTCAATTTCAACTAAATCCATGGCTGCTACCGTTTTTGGAACCGCCGCCGCCTCCTCCGCCTCATCAACCACTCGTTTCCTCTCCTCAGCCACCAGAGCTACACTATCTTTCTCTTCACGTTCACCATCGCTTCTCTCTCGCTCTTCGTCCTCCTCTTTCAAGTTCCTCAGATCGTCTCCTCTCATTTCTTACCTGTTTCTGAACCAGGGAAGGCCGAATTCTTGTGTATCGAATAGAGAATTCAGTGCGGCGTCTAATCCGAAATGCCTGGCATCGGACCCTGAGCAGTTGAAGAGTGCTAGAGAAGATATCAAGGAGCTCCTGAAGACCACATTCTGTCATCCTATTTTGGTACGTCTAGGTTGGCATGATGCTGGAACTTACAATAAAAATATTGAGGAATGGCCCCAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTTGAGCTGGGGCATGGTGCCAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAGAAGTATTCTAACGTGACATATGCAGACCTATTTCAGCTGGCCAGTGCTACAGCTATCGAGGAGGCTGGCGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTTGGGCCGGAGCAATGCCCTGAGGAGGGGAGGCTTCCTGATGCTGGTCCTCCATCACCTGCTGCTCATCTACGAGAAGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCTGGGGCACACACGCTAGGGAGAGCTAGGCCAGAACGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAGATGGACCTGGTGCACCTGGTGGTCAATCCTGGACCGTGCAATGGTTGAAGTTTGACAACTCATATTTTAAGGATATCAAAGAGAGGGCAGATGAGGAATTACTGGTGTTGCCAACTGACGCAGTTCTCTTTGAAGATCCAGGATTTAAGGTTTATGCTGAAAAATATGTTGAAGATCAAGAAGCATTCTTCAAAGATTATGCTGAAGCCCATGCCAAACTCAGCAACCTTGGTGCTAAATTTGACCCTCCTGAGGGTATTGTGCTTGATGATGCATCTTCGAAACCTGCTGGAGAGAAGTTCGAGGCCGCCAAATACTCATATGGAAAGAGAGAGCTATCAGACTCAATGAAGCAGAAGATTCGGGCTGAATACGAAGGTTTTGGTGGAAGTCCAGATAAGCCTTTACCAACAAACTACTTCCTTAATATCATTGTTGTGATTGCTGTTTTAGCAATTTTGACATCTCTGCTTGGAAACTAA | 1803 | 45.37 | MFHSNFQNHLSQPELAVSIEYGTTEVLNMLAIWHWMYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGFGCFGFSAFHVTGLYGPRIWISDPYGLIGRVQAVNPAWGVEGFDPFVPGGIASHHILAGQVDPKQKERGRKKGKPQMAEPLSLQLTLPSHSSPIAAASKNSISTKSMAATVFGTAAASSASSTTRFLSSATRATLSFSSRSPSLLSRSSSSSFKFLRSSPLISYLFLNQGRPNSCVSNREFSAASNPKCLASDPEQLKSAREDIKELLKTTFCHPILVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLREVFYRMGLNDKEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERADEELLVLPTDAVLFEDPGFKVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDASSKPAGEKFEAAKYSYGKRELSDSMKQKIRAEYEGFGGSPDKPLPTNYFLNIIVVIAVLAILTSLLGN | 600 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 16388032 | 16401406 | - | CaPI482276_08g010170.1 | Cam08g1017 | 133068 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam08g1017 | 600 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 411 | 421 | IPR019793 | - | |
| Cam08g1017 | 600 | PRINTS | Haem peroxidase superfamily signature | 281 | 295 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Haem peroxidase superfamily signature | 451 | 466 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Haem peroxidase superfamily signature | 343 | 360 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Haem peroxidase superfamily signature | 361 | 373 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Haem peroxidase superfamily signature | 411 | 426 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | FunFam | L-ascorbate peroxidase S chloroplastic/mitochondrial | 267 | 391 | - | - | |
| Cam08g1017 | 600 | Gene3D | Peroxidase, domain 2 | 389 | 512 | - | - | |
| Cam08g1017 | 600 | PRINTS | Plant ascorbate peroxidase signature | 281 | 296 | IPR002207 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Plant ascorbate peroxidase signature | 342 | 360 | IPR002207 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Plant ascorbate peroxidase signature | 480 | 504 | IPR002207 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PRINTS | Plant ascorbate peroxidase signature | 361 | 373 | IPR002207 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | ProSiteProfiles | Plant heme peroxidase family profile. | 284 | 539 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | FunFam | L-ascorbate peroxidase T, chloroplastic | 389 | 512 | - | - | |
| Cam08g1017 | 600 | SUPERFAMILY | Heme-dependent peroxidases | 261 | 520 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | PANTHER | THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED | 192 | 526 | IPR044831 | GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER) | |
| Cam08g1017 | 600 | Pfam | Peroxidase | 268 | 499 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cam08g1017 | 600 | CDD | ascorbate_peroxidase | 258 | 522 | - | - | |
| Cam08g1017 | 600 | SUPERFAMILY | Photosystem II antenna protein-like | 26 | 128 | IPR036001 | GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro) | |
| Cam08g1017 | 600 | MobiDBLite | consensus disorder prediction | 424 | 446 | - | - | |
| Cam08g1017 | 600 | Gene3D | - | 267 | 520 | - | - | |
| Cam08g1017 | 600 | Pfam | Photosystem II protein | 26 | 127 | IPR000932 | GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam08g1017 | K00434 | - | - | csv:101216755 | 791.186 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam08g1017 | Cam-Chr8:16388032 | Cam08g1797 | Cam-Chr8:24130093 | 4.50E-28 | dispersed | |
| Cam08g1017 | Cam-Chr8:16388032 | Cam01g2091 | Cam-Chr1:33929674 | 2.90E-59 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g248 | . | . | . | . | . | . | . | . | Cmo04g02484 | Cmo15g00678 | . | . | . | . | Sed01g3111 | . | . | Bhi04g01899 | Tan11g1263 | Cmetu03g1741 | . | Hepe02g2244 | . | . | Cla08g00603 | Cam08g1017 | Cec08g0607 | Cco08g0718 | Clacu08g0728 | . | Cre08g0536 | . | Cone7ag1522 | Cone17ag1289 | Cone20ag0439 | . | . | . | Cme03g00534 | Blo17g00174 | . | . | Bda13g01479 | Bpe02g01647 | Bpe14g00386 | Bma01g00808 | Bma02g00215 | . | . | . | . | . | Car04g02298 | Car15g00616 | Cpe01g02059 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g00443 | . | Chy03g00786 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003748 | 3 | 2 | 3 | 2 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 3 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 46 |