Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1061 ATGAGGCGTCCAATGGAGACGCTTGTGCAACTTACAGCAGTGAAAATAATAGCCATCTTATCAGCGGCTTTTGTCGTCGTAGCGGCCACAGCGAACACAACCGTGACATTAGCTTCAAAAGCCTTACCTGGGTGCGACGAATGGTGCGGCGACGTGCAGATTCCATATCCGTTCGGAACGAGGAAAGGGTGTTATCTAAATGAAATGTTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAGGGAGCGGTAACCTTAATGTTACAGATATATCCATCTCGGGGGAGCTCCAAATCATGTACCCCGCGGCCCAAGATTGCCACCCTCCAAATATTGGTCCTGATGTTTTTGCCTCCATCTTTCTCGATGTACCTGCCTACACTATTTCCAGTTCCAAAAACAAGTTCATTGCTATCGGCTGCGATACTTTGGCTGGTTTTTCTGGTCGCGACCCAGAAGGGCAAACCTTTAGAACTGCATGTGTAGCGTTGTGTCATGATATTAGTTCTGTTAAAGATGGGGCATGCTCTGGCAATGGGTGCTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAGTTTACGGTCAACAGTTTAAACAATCACATTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCCTTTGTAATTGAACAAAACAACTTCAACTTCTCTTCAAAGTACATCCGCAATTTTCCTGAAAAGAGAATTTCGGGAGTGCTTGATTGGGCCATTAGTAACACAACTTGTGTAACGGCACAGAACAAAACTAATTGTATATGTGGCTCAAATAGCACAAAGGTTGACTTGCTTGATGGTCGATCTCAATATCGTTGCCAGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTCCCCCAAGGTTGTCAAGATATTGACGAGTGCAAGGACGAGATACTTCACGACTGCAGGTTTGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTCAAAGGAGATGGAAGACGTAGGGGAGAGGGTTGCACCCGAAAATCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGATTCACAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAATTTTTTGAGAACAATGGTGGTTTGATGCTTCAACAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTAGAGACAGAAGTTCCATTGTTGGTGTATGAGTTCATCGCCAACGGCACACTTTACGAATATGTCCATGATAAAACCAATGATCGTCATTCCCTTTCATGGGAAGCTCGTTTGAGAATAGCTTCAGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTGTACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCAAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTAGAGAGCACAAGAGAGGAGATGATGGGTTATTTGGTGCAATCAGATGGAGGTTCAGAATCAACATCCAACCAACTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2286 43.57 MRRPMETLVQLTAVKIIAILSAAFVVVAATANTTVTLASKALPGCDEWCGDVQIPYPFGTRKGCYLNEMFFIECNTTHYDSPKAFLGSGNLNVTDISISGELQIMYPAAQDCHPPNIGPDVFASIFLDVPAYTISSSKNKFIAIGCDTLAGFSGRDPEGQTFRTACVALCHDISSVKDGACSGNGCCQLEIPSGLNYLEFTVNSLNNHINVSSFNPCGYAFVIEQNNFNFSSKYIRNFPEKRISGVLDWAISNTTCVTAQNKTNCICGSNSTKVDLLDGRSQYRCQCLEGFEGNPYLPQGCQDIDECKDEILHDCRFECVNTIGNYTCNCPKDFKGDGRRRGEGCTRKSKSFVQIIVGVTVGFTVLVIGSTWLYLGYRKWKFIKLKEKFFENNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIANGTLYEYVHDKTNDRHSLSWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNCTAKVSDFGASKLVPIDQSQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTREEMMGYLVQSDGGSESTSNQLTASGSTNAVDDSMKVHILPLIHNGR 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16969043 16972650 + CaPI482276_08g010610.1 Cam08g1061 133112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1061 761 Gene3D Phosphorylase Kinase; domain 1 398 502 - -
Cam08g1061 761 ProSitePatterns Calcium-binding EGF-like domain signature. 303 328 IPR018097 GO:0005509(InterPro)
Cam08g1061 761 FunFam Wall-associated receptor kinase 2 503 720 - -
Cam08g1061 761 SMART egf_5 306 346 IPR000742 -
Cam08g1061 761 SMART egf_5 255 302 IPR000742 -
Cam08g1061 761 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Cam08g1061 761 Pfam Wall-associated receptor kinase galacturonan-binding 45 100 IPR025287 GO:0030247(InterPro)
Cam08g1061 761 SMART serkin_6 427 705 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1061 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 714 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cam08g1061 761 CDD STKc_IRAK 433 701 - -
Cam08g1061 761 Gene3D Plasmodium vivax P25 domain 244 352 - -
Cam08g1061 761 CDD EGF_CA 303 337 - -
Cam08g1061 761 FunFam Fibrillin 2 298 341 - -
Cam08g1061 761 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524(InterPro)
Cam08g1061 761 SMART egfca_6 303 346 IPR001881 GO:0005509(InterPro)
Cam08g1061 761 FunFam Wall-associated receptor kinase 2 397 502 - -
Cam08g1061 761 Pfam Protein tyrosine and serine/threonine kinase 431 698 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g1061 761 SUPERFAMILY EGF/Laminin 302 339 - -
Cam08g1061 761 Gene3D Transferase(Phosphotransferase) domain 1 503 722 - -
Cam08g1061 761 SUPERFAMILY Protein kinase-like (PK-like) 405 699 IPR011009 -
Cam08g1061 761 ProSiteProfiles Protein kinase domain profile. 427 705 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1061 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0237 Cam-Chr6:4135466 Cam08g1061 Cam-Chr8:16969043 1.60E-36 dispersed
Cam08g1061 Cam-Chr8:16969043 Cam08g1063 Cam-Chr8:16995935 2.30E-255 dispersed
Cam11g0940 Cam-Chr11:14946461 Cam08g1061 Cam-Chr8:16969043 4.20E-50 dispersed
Cam08g1060 Cam-Chr8:16957219 Cam08g1061 Cam-Chr8:16969043 0.00E+00 tandem
Cam08g1061 Cam-Chr8:16969043 Cam08g1062 Cam-Chr8:16988897 1.50E-262 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85361 PF07714 PK_Tyr_Ser-Thr 2.20E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1061 - - - 0.0