Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1065 ATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTACGACGAAAGCACAGTGGTTGGCAAAGGTGGCTACGGTACCGTTTACAAAGGAGTCTTAGATGACGGTTTGGCAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTGACCAGTTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCAACGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTGACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCAACCATGCTTATCTCCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCGGCGTCCTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTAGACAAAAACTACACAGCAAAAGTCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCAAACTCAAATATCCACAATGGTGCAAGGGACAGTTGGGTATTTGGATCCGGAATATTTTTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTATAGCTTTGGGATTGTACTTCTAGAGCTTGTAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGCTGTTTGCAATGGAAGAAGATCGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAACTTTGAGCAAATAAAAGAAGTGGCAAAACTGGCAAGAGAGTGTGTGAAAGTAAAAAGGGCGGAGCGGCCAACCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGAAACTGATGCAGGTTGAAAACTGTTCATGGGATAGAAGCAATTTGTTCGATGGAGCTTTAAACTCAAGCCAACATGTTTCCAATGATACGGACGAGAGCATCGAAGGCTGA 981 43.73 MLKIFTQEELEKATNKYDESTVVGKGGYGTVYKGVLDDGLAVAIKKSKLVNQSQTDQFINEVIVLSQINHRNVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHAYLPWEARLKIASEIAGVLSYLHSSASTPIIHRDIKSNNILLDKNYTAKVSDFGTSKLVPLDQTQISTMVQGTVGYLDPEYFLTSELTEKSDVYSFGIVLLELVTGKKAVCFDGPEEERNLAMYVLFAMEEDRVEEVVEKGMATEGNFEQIKEVAKLARECVKVKRAERPTMKEVAMELEGLKLMQVENCSWDRSNLFDGALNSSQHVSNDTDESIEG 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17024790 17025770 + CaPI482276_08g010650.1 Cam08g1065 133116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1065 326 Gene3D Transferase(Phosphotransferase) domain 1 93 306 - -
Cam08g1065 326 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524(InterPro)
Cam08g1065 326 CDD STKc_IRAK 23 290 - -
Cam08g1065 326 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 297 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cam08g1065 326 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Cam08g1065 326 Pfam Protein tyrosine and serine/threonine kinase 21 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g1065 326 PIRSF ILK 4 307 - -
Cam08g1065 326 SMART serkin_6 17 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1065 326 FunFam Wall-associated receptor kinase 2 1 92 - -
Cam08g1065 326 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Cam08g1065 326 FunFam Wall-associated receptor kinase 2 93 306 - -
Cam08g1065 326 ProSiteProfiles Protein kinase domain profile. 17 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1065 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1065 Cam-Chr8:17024790 Cam11g0938 Cam-Chr11:14910907 1.10E-110 dispersed
Cam08g1063 Cam-Chr8:16995935 Cam08g1065 Cam-Chr8:17024790 1.10E-131 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85364 PF00069 Pkinase 2.80E-50 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1065 - - - 0.0