Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1070 ATGGGCGATATTACGACGAAATTCCCAAGAAAACCTACCCATAGCCCAGATCCTATCCCACGAACAGCCGCTTCCTATTATAAATCTCCAGAACAGGACTCCACTTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCGGAATCGGGGGTTTGTTCACCCACGCTTTGGGGTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCTCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTCTCTCTCAAAGATCTCGTTGAACATCACTTGACTAATTCGAAACGTCAACAAGACGGTGACGCTGCTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCGTAGCAAGAACCGGAGTGAAACTAGGGCACTTGTTACCAGAAGTAAAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTCGGCCAGGTTTCGGCTAAAAAGAAGAGTAATCTTAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCGCCGAAGCCACCACCGGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTGGCTGGCGGCGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGATCCGACCCATCGGCCCACTTTGGCTTTCGAGTTGACGTTGTCAACAAGTTTACTATGCCATTCATGTCGTGGACTCGTAAACAAAGTGGGACCCAATGGCCGGTAGTCTTAGTCCAGCACGAAAACGCGCTTCCTTTGTCGCCATTTGGCAGATGGAATTTATGGGATTTCCTCTATCACGGTGTCTCCGATGTATACTTTCGTTTTCTTTCTTTTGTTGATCTTGGTGTTAACTTTTTAGATTGGGGTAAATTTGCTTTTGCTTTAGTTTTTCTGCTTTATGGGTTGCTTCGTCATGAGATTCAAGGACAGAAGGGCTTATTTGGGTGCAAAAGAATCAGAGGGATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCTACAAATGATGTGCTTATCGCTCCCGATTGGGCGATAAATATTGAGCTCTGTGATATTATTAACATGGATCCTAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTTGCTAGCAAAAATCCTAAAATACAACTTCTAACCCTCCATGTATTAGAGGCTGTAAGCAAAAATTGTGGCGATACTGTTTTTAAGCTGATTGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCCTGATTCAACTGTACGGGACAAAATATTAGCTTTGGTAGATGCATGGCAAGCAGCCTTTGGTGGTGGCCCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCTAGAGAAGAGAACGTTGGGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCACTGAGCACCCTGTTTCAGCCAGTTATGATGATCTTGCTGTTCAGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTAGCAGATGTTCTATTGGAAATGCTTGGTGCGCTGGACCCTAAGACTCCCGAGGCTTTGAAGCAAGAAGTGATTGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTCGTGATACTTGTGAATGAGACGACAGATGAGGAACTATTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCACGATGACATTGCTAAAGGAACCTTTGTGACGGAAGCTAGAAGAGCAGAACCTCCCGTTCCATCGGTTCCATATATCAACCTTGAGGACGATGAGTCGGAAGATGACTTCACTCCGTTATCTCGCAGGCCAACGAGAGATCACGTTTATGAAAGGGACAGGAAACTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCAAATAAGTCGGCTGGTGCTGAAATGATGGATCATCTTAGCGGCGACGTGTACAAACCTGAAGAGTCTCCAAGGATAGTTGAGCCACCATCAACTTCTTCTTCTTCACCTTTCTACACTAGACAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATGCCCACCAATACACTCCCGGCAACACCTCGGGACGCTCAATCTCCGAGTGCCCTCCCTCCCCCACCCTCAAGACATAATCAAAGACAACTATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACACCATAGTTGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCTGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2586 46.95 MGDITTKFPRKPTHSPDPIPRTAASYYKSPEQDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWGSNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDAASLSRDDSSSETSFRRDRSKNRSETRALVTRSKSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRSDPSAHFGFRVDVVNKFTMPFMSWTRKQSGTQWPVVLVQHENALPLSPFGRWNLWDFLYHGVSDVYFRFLSFVDLGVNFLDWGKFAFALVFLLYGLLRHEIQGQKGLFGCKRIRGMSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLASKNPKIQLLTLHVLEAVSKNCGDTVFKLIVDRNILHEMVKIVKKKPDSTVRDKILALVDAWQAAFGGGPKGKYPQYYAAYNELKNAGFQFPPREENVGQFFSPPQIQPVTEHPVSASYDDLAVQVSLQSDSSGLSLPEIQNAQGLADVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFVTEARRAEPPVPSVPYINLEDDESEDDFTPLSRRPTRDHVYERDRKLANGQSSRVSPLPSPSSNKSAGAEMMDHLSGDVYKPEESPRIVEPPSTSSSSPFYTRQPLFDEPPPRSMPTNTLPATPRDAQSPSALPPPPSRHNQRQLYFEQQKAVTGGTQPHLSNDYSSYDTIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17054585 17062431 - CaPI482276_08g010700.1 Cam08g1070 133121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1070 861 MobiDBLite consensus disorder prediction 787 813 - -
Cam08g1070 861 MobiDBLite consensus disorder prediction 695 714 - -
Cam08g1070 861 MobiDBLite consensus disorder prediction 672 694 - -
Cam08g1070 861 Pfam GAT domain 570 643 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1070 861 CDD VHS 383 509 - -
Cam08g1070 861 SUPERFAMILY ENTH/VHS domain 381 516 IPR008942 -
Cam08g1070 861 MobiDBLite consensus disorder prediction 655 813 - -
Cam08g1070 861 MobiDBLite consensus disorder prediction 230 261 - -
Cam08g1070 861 PANTHER TOM1-LIKE PROTEIN 374 858 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cam08g1070 861 SUPERFAMILY GAT-like domain 532 643 - -
Cam08g1070 861 FunFam TOM1-like protein 2 377 525 - -
Cam08g1070 861 MobiDBLite consensus disorder prediction 127 166 - -
Cam08g1070 861 SMART VHS_2 378 511 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1070 861 MobiDBLite consensus disorder prediction 50 92 - -
Cam08g1070 861 MobiDBLite consensus disorder prediction 145 165 - -
Cam08g1070 861 ProSiteProfiles GAT domain profile. 554 642 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1070 861 MobiDBLite consensus disorder prediction 1 35 - -
Cam08g1070 861 ProSiteProfiles VHS domain profile. 385 515 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1070 861 MobiDBLite consensus disorder prediction 734 748 - -
Cam08g1070 861 Gene3D - 372 532 IPR008942 -
Cam08g1070 861 MobiDBLite consensus disorder prediction 52 92 - -
Cam08g1070 861 Pfam VHS domain 382 510 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1070 861 CDD GAT_GGA-like_plant 562 640 - -
Cam08g1070 861 Gene3D - 551 647 IPR038425 -
Cam08g1070 861 MobiDBLite consensus disorder prediction 197 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1070 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0766 Cam-Chr8:8147046 Cam08g1070 Cam-Chr8:17054585 4.60E-24 dispersed
Cam08g1070 Cam-Chr8:17054585 Cam11g0849 Cam-Chr11:11222966 5.10E-150 dispersed
Cam08g1070 Cam-Chr8:17054585 Cam08g1690 Cam-Chr8:23172210 1.00E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76