Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1139 ATGAAGAGGTTTGTTGGTTATGTAGAGGCCATGGAGGTCCACAAGCCCTACATTGCAATGTTGTTTGTTCAATGTGTTTATTCTGGAATGGCTTTGTTCTCTAAAGCAGCCATTTCTCAAGGCATGAACCCGCCCGTGTTCGTCTTTTATCGTCAAGCTTTCGCTACCGTTGCCATGGCTCCTCTCGCGATCTTACTCGAAAGAAAAAAGGCGGTGCCTTTATCTTTCAAGTTCCTTTCCAAGGTGTTCTTGGTTTCTCTAGTTGGGATCACTTTGAGTTTAAATCTTTATTACATAGCAATTAGCCACACATCAGCAACATTTGCAGCCGCCACTACCAACACCATTCCTGCCATTACCCTCCTTTTCGCTCTCCTTTTCGGATATGAAAGCATTTGCATAAGAAAGTTTGAAGGGATGGCCAAATTGATGGGGGCAGTGATAGGTTTTTCAGGGGCTTTAGTATTTGCTTTTGTGAAGGGTCCACCAATGAAATTCATGAATTGGTATCCACAAACAAATAATAATAATAATAATTCAACTTCATTTCAAGCTTATTCCACCTTGGAATGGATCAAGGGTTCATTCACTATGCTTTCTGCCAACATTGCTTGGTCTTTATGGCTTGTTTTGCAGGGCTCCATTGTGAAGGAATATCCAGCAAAATTGAGAATTACAACTTTGCAGTGTTTCTTTAGTTTGATACAATCAGCTTTGTGGGCTTTGGTAATGGAGAGAAACCCACAAGCTTGGAAACTTGGATGGAATCTTCAACTCTTCTCTGTTGCCTATTGTGGTATAATTGTGACTGGAATGACATATTGGCTACAAATATGGAGTGTAGAGAAGAAAGGGCCAGTTTTTACAGCTATGTTTACACCATTAGCTCTCATCATAACAGCAATCTTCTCAGCATTACTATGGAAGGAAACCCTTCATTGGGGAAGTCTTGGTGGGGGTATTTTGCTGGTGATGGGACTTTACTTTGTTCTATGGGGAAAGAAGAGAGAAGAAGAAGAACAACAACAACTAAGACAACTAAGACATGACACCAAAGAGGAAACCATTTTGGAGTGCATTACAACAACACATCACTAA 1098 40.71 MKRFVGYVEAMEVHKPYIAMLFVQCVYSGMALFSKAAISQGMNPPVFVFYRQAFATVAMAPLAILLERKKAVPLSFKFLSKVFLVSLVGITLSLNLYYIAISHTSATFAAATTNTIPAITLLFALLFGYESICIRKFEGMAKLMGAVIGFSGALVFAFVKGPPMKFMNWYPQTNNNNNNSTSFQAYSTLEWIKGSFTMLSANIAWSLWLVLQGSIVKEYPAKLRITTLQCFFSLIQSALWALVMERNPQAWKLGWNLQLFSVAYCGIIVTGMTYWLQIWSVEKKGPVFTAMFTPLALIITAIFSALLWKETLHWGSLGGGILLVMGLYFVLWGKKREEEEQQQLRQLRHDTKEETILECITTTHH 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17730145 17733099 + CaPI482276_08g011390.1 Cam08g1139 133190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1139 365 PANTHER WAT1-RELATED PROTEIN 18 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cam08g1139 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 337 - -
Cam08g1139 365 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020(InterPro)
Cam08g1139 365 Pfam EamA-like transporter family 16 148 IPR000620 GO:0016020(InterPro)
Cam08g1139 365 Coils Coil 334 354 - -
Cam08g1139 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0078 Cam-Chr2:1882613 Cam08g1139 Cam-Chr8:17730145 4.60E-36 dispersed
Cam02g0079 Cam-Chr2:1893873 Cam08g1139 Cam-Chr8:17730145 9.60E-82 dispersed
Cam06g1419 Cam-Chr6:25608956 Cam08g1139 Cam-Chr8:17730145 4.80E-48 dispersed
Cam08g1139 Cam-Chr8:17730145 Cam10g1612 Cam-Chr10:29909522 1.30E-59 dispersed
Cam08g1139 Cam-Chr8:17730145 Cam01g1606 Cam-Chr1:29623737 2.10E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244