Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1140 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGGACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTTGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATGGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTAGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCACAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 46.96 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDGPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17745688 17748207 + CaPI482276_08g011400.1 Cam08g1140 133191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1140 432 CDD F-box_AtTLP-like 53 97 - -
Cam08g1140 432 FunFam Tubby-like F-box protein 110 432 - -
Cam08g1140 432 Gene3D - 48 103 - -
Cam08g1140 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Cam08g1140 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cam08g1140 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cam08g1140 432 MobiDBLite consensus disorder prediction 368 388 - -
Cam08g1140 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cam08g1140 432 PANTHER TUBBY-RELATED 40 431 - -
Cam08g1140 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cam08g1140 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cam08g1140 432 Pfam Tub family 114 427 IPR000007 -
Cam08g1140 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2064 Cam-Chr5:29312176 Cam08g1140 Cam-Chr8:17745688 1.50E-118 dispersed
Cam07g1053 Cam-Chr7:24878384 Cam08g1140 Cam-Chr8:17745688 8.30E-97 dispersed
Cam08g0782 Cam-Chr8:8903032 Cam08g1140 Cam-Chr8:17745688 7.10E-201 dispersed
Cam08g1140 Cam-Chr8:17745688 Cam09g0341 Cam-Chr9:3775370 1.80E-10 dispersed
Cam08g1140 Cam-Chr8:17745688 Cam05g0673 Cam-Chr5:5886305 1.00E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52400 PF01167 Tub 1.10E-115 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1140 K19600 - csv:101203074 851.277