Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1140 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGGACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTTGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATGGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTAGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCACAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 46.96 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDGPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17745688 17748207 + CaPI482276_08g011400.1 Cam08g1140 133191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1140 432 CDD F-box_AtTLP-like 53 97 - -
Cam08g1140 432 FunFam Tubby-like F-box protein 110 432 - -
Cam08g1140 432 Gene3D - 48 103 - -
Cam08g1140 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Cam08g1140 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cam08g1140 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cam08g1140 432 MobiDBLite consensus disorder prediction 368 388 - -
Cam08g1140 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cam08g1140 432 PANTHER TUBBY-RELATED 40 431 - -
Cam08g1140 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cam08g1140 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cam08g1140 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cam08g1140 432 Pfam Tub family 114 427 IPR000007 -
Cam08g1140 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1140 K19600 - - csv:101203074 851.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2064 Cam-Chr5:29312176 Cam08g1140 Cam-Chr8:17745688 1.50E-118 dispersed
Cam07g1053 Cam-Chr7:24878384 Cam08g1140 Cam-Chr8:17745688 8.30E-97 dispersed
Cam08g0782 Cam-Chr8:8903032 Cam08g1140 Cam-Chr8:17745688 7.10E-201 dispersed
Cam08g1140 Cam-Chr8:17745688 Cam09g0341 Cam-Chr9:3775370 1.80E-10 dispersed
Cam08g1140 Cam-Chr8:17745688 Cam05g0673 Cam-Chr5:5886305 1.00E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0782 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.8e-178 620.5
Cam05g1157 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cam08g1140 . 1 432 TUB Transcription Factor Family AT1G76900 68.6 1.7e-168 589.3
Cam05g0673 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 3.2e-111 399.1
Cam05g1157 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cam08g0782 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.7e-94 341.3
Cam08g1140 . 175 432 TUB Transcription Factor Family AT1G25280 70.0 1.5e-92 336.3
Cam05g0673 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.7e-70 261.5
Cam05g2064 . 315 542 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Cam01g2002 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 8.6e-64 240.7
Cam06g0544 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Cam05g0673 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Cam06g0544 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Cam08g0782 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.7e-84 308.5
Cam08g1140 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Cam05g1157 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cam05g2064 . 251 542 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Cam07g1053 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 4.2e-67 251.9
Cam01g2002 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 9.2e-139 490.3
Cam05g2064 . 137 542 TUB Transcription Factor Family AT2G18280 59.0 4.4e-125 444.9
Cam05g1157 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Cam08g0782 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Cam05g0673 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 3.8e-116 415.2
Cam08g1140 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Cam06g0544 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 2.9e-100 362.5
Cam05g0673 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 6.8e-161 563.9
Cam06g0544 . 1 383 TUB Transcription Factor Family AT2G47900 64.5 5.6e-147 517.7
Cam08g0782 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Cam08g1140 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 2.5e-131 465.7
Cam05g1157 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.5e-131 463.8
Cam05g2064 . 146 542 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cam01g2002 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.8e-114 408.3
Cam07g1053 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 8.7e-100 360.9
Cam09g0341 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 2.9e-73 272.3
Cam08g0782 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cam05g1157 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Cam08g1140 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 4.1e-141 498.0
Cam05g0673 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 3.6e-105 378.6
Cam05g2064 . 204 542 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Cam06g0544 . 49 362 TUB Transcription Factor Family AT1G43640 50.4 5.4e-93 338.2
Cam05g2064 . 170 542 TUB Transcription Factor Family AT1G47270 64.4 1.0e-134 476.9
Cam01g2002 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 1.0e-121 433.7
Cam05g1157 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cam08g0782 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Cam08g1140 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 4.2e-112 401.7
Cam05g0673 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Cam07g1053 . 50 383 TUB Transcription Factor Family AT1G53320 77.7 4.8e-153 537.7
Cam05g0673 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 3.7e-97 351.7
Cam05g1157 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cam06g0544 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.4e-82 301.6
Cam08g1140 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cam08g0782 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Cam05g2064 . 255 542 TUB Transcription Factor Family AT3G06380 52.9 3.5e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52400 PF01167 Tub 1.10E-115 CL0395 Cam TF