Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g1159 | ATGGCGGCTACAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTTCTTCGACGGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAAAGTGGTTATGGAAATGTTTTTATCAAAAATCTAGATACATCCATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAACTGAGGAGTCGGCCGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGACACCAAGAAAGGATTCGAGCAAATGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGAGGGTGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACGAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCGGTTGCCCAGCGCAAAGAAGAAAGAAAGGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCCGGAATGGCAGGATTTCATCCTGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTGCCGGATATGGCTTCCAACCTCAACTTATGAGCGGTATGCGACCTAGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGCTTCGTGGCTCCGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGAATAGAGCCGCCCGTCTTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA | 1965 | 46.11 | MAATAPAPATAASVQTAAIPSSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFETEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDEGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGMRRGGNSQSVQQQLLLRGSGQGFRYMNNARNGIEPPVLPQGLVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17959582 | 17962655 | + | CaPI482276_08g011590.1 | Cam08g1159 | 133210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g1159 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 294 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 320 | 397 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | CDD | RRM4_I_PABPs | 319 | 397 | - | - | |
Cam08g1159 | 654 | FunFam | Polyadenylate-binding protein | 303 | 408 | - | - | |
Cam08g1159 | 654 | FunFam | Polyadenylate-binding protein | 118 | 204 | - | - | |
Cam08g1159 | 654 | Pfam | RNA recognition motif | 215 | 280 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | Pfam | RNA recognition motif | 125 | 193 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | Pfam | RNA recognition motif | 37 | 107 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | Pfam | RNA recognition motif | 322 | 390 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | Coils | Coil | 289 | 309 | - | - | |
Cam08g1159 | 654 | SMART | poly_2 | 574 | 637 | IPR002004 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | Pfam | Poly-adenylate binding protein, unique domain | 569 | 634 | IPR002004 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SMART | rrm1_1 | 36 | 109 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SMART | rrm1_1 | 214 | 290 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SMART | rrm1_1 | 321 | 393 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676(InterPro) | |
Cam08g1159 | 654 | SMART | rrm2_1 | 321 | 392 | IPR003954 | GO:0003676(InterPro) | |
Cam08g1159 | 654 | SMART | rrm2_1 | 214 | 281 | IPR003954 | GO:0003676(InterPro) | |
Cam08g1159 | 654 | SMART | rrm2_1 | 36 | 109 | IPR003954 | GO:0003676(InterPro) | |
Cam08g1159 | 654 | FunFam | Polyadenylate-binding protein | 12 | 117 | - | - | |
Cam08g1159 | 654 | Gene3D | - | 33 | 123 | IPR012677 | - | |
Cam08g1159 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 113 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | Gene3D | - | 198 | 301 | IPR012677 | - | |
Cam08g1159 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 401 | IPR035979 | GO:0003676(InterPro) | |
Cam08g1159 | 654 | CDD | RRM3_I_PABPs | 212 | 295 | - | - | |
Cam08g1159 | 654 | FunFam | Polyadenylate-binding protein | 558 | 640 | - | - | |
Cam08g1159 | 654 | Gene3D | - | 302 | 406 | IPR012677 | - | |
Cam08g1159 | 654 | Gene3D | - | 558 | 639 | - | - | |
Cam08g1159 | 654 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 635 | IPR006515 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | CDD | RRM2_I_PABPs | 121 | 197 | IPR045305 | - | |
Cam08g1159 | 654 | PANTHER | RNA BINDING PROTEIN | 23 | 216 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Cam08g1159 | 654 | Coils | Coil | 395 | 415 | - | - | |
Cam08g1159 | 654 | Gene3D | - | 124 | 197 | IPR012677 | - | |
Cam08g1159 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 200 | IPR035979 | GO:0003676(InterPro) | |
Cam08g1159 | 654 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 562 | 639 | IPR002004 | GO:0003723(InterPro) | |
Cam08g1159 | 654 | SUPERFAMILY | PABC (PABP) domain | 509 | 641 | IPR036053 | GO:0003723(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0642 | Cam-Chr2:7421315 | Cam08g1159 | Cam-Chr8:17959582 | 4.30E-186 | dispersed | |
Cam05g1180 | Cam-Chr5:11063566 | Cam08g1159 | Cam-Chr8:17959582 | 8.40E-189 | dispersed | |
Cam08g1159 | Cam-Chr8:17959582 | Cam10g1920 | Cam-Chr10:33250459 | 5.40E-120 | dispersed | |
Cam08g1159 | Cam-Chr8:17959582 | Cam08g1162 | Cam-Chr8:17974367 | 6.60E-09 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g1159 | K13126 | - | csv:101219081 | 1147.5 |