Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1159 ATGGCGGCTACAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTTCTTCGACGGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAAAGTGGTTATGGAAATGTTTTTATCAAAAATCTAGATACATCCATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAACTGAGGAGTCGGCCGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGACACCAAGAAAGGATTCGAGCAAATGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGAGGGTGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACGAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCGGTTGCCCAGCGCAAAGAAGAAAGAAAGGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCCGGAATGGCAGGATTTCATCCTGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTGCCGGATATGGCTTCCAACCTCAACTTATGAGCGGTATGCGACCTAGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGCTTCGTGGCTCCGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGAATAGAGCCGCCCGTCTTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA 1965 46.11 MAATAPAPATAASVQTAAIPSSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFETEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDEGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGMRRGGNSQSVQQQLLLRGSGQGFRYMNNARNGIEPPVLPQGLVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17959582 17962655 + CaPI482276_08g011590.1 Cam08g1159 133210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1159 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 294 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 CDD RRM4_I_PABPs 319 397 - -
Cam08g1159 654 FunFam Polyadenylate-binding protein 303 408 - -
Cam08g1159 654 FunFam Polyadenylate-binding protein 118 204 - -
Cam08g1159 654 Pfam RNA recognition motif 215 280 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 Pfam RNA recognition motif 125 193 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 Pfam RNA recognition motif 37 107 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 Pfam RNA recognition motif 322 390 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 Coils Coil 289 309 - -
Cam08g1159 654 SMART poly_2 574 637 IPR002004 GO:0003723(InterPro)
Cam08g1159 654 Pfam Poly-adenylate binding protein, unique domain 569 634 IPR002004 GO:0003723(InterPro)
Cam08g1159 654 SMART rrm1_1 36 109 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 SMART rrm1_1 214 290 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 SMART rrm1_1 124 196 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 SMART rrm1_1 321 393 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 SMART rrm2_1 124 196 IPR003954 GO:0003676(InterPro)
Cam08g1159 654 SMART rrm2_1 321 392 IPR003954 GO:0003676(InterPro)
Cam08g1159 654 SMART rrm2_1 214 281 IPR003954 GO:0003676(InterPro)
Cam08g1159 654 SMART rrm2_1 36 109 IPR003954 GO:0003676(InterPro)
Cam08g1159 654 FunFam Polyadenylate-binding protein 12 117 - -
Cam08g1159 654 Gene3D - 33 123 IPR012677 -
Cam08g1159 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 Gene3D - 198 301 IPR012677 -
Cam08g1159 654 SUPERFAMILY RNA-binding domain, RBD 212 401 IPR035979 GO:0003676(InterPro)
Cam08g1159 654 CDD RRM3_I_PABPs 212 295 - -
Cam08g1159 654 FunFam Polyadenylate-binding protein 558 640 - -
Cam08g1159 654 Gene3D - 302 406 IPR012677 -
Cam08g1159 654 Gene3D - 558 639 - -
Cam08g1159 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 635 IPR006515 GO:0003723(InterPro)
Cam08g1159 654 CDD RRM2_I_PABPs 121 197 IPR045305 -
Cam08g1159 654 PANTHER RNA BINDING PROTEIN 23 216 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cam08g1159 654 Coils Coil 395 415 - -
Cam08g1159 654 Gene3D - 124 197 IPR012677 -
Cam08g1159 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723(InterPro)
Cam08g1159 654 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676(InterPro)
Cam08g1159 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723(InterPro)
Cam08g1159 654 SUPERFAMILY PABC (PABP) domain 509 641 IPR036053 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0642 Cam-Chr2:7421315 Cam08g1159 Cam-Chr8:17959582 4.30E-186 dispersed
Cam05g1180 Cam-Chr5:11063566 Cam08g1159 Cam-Chr8:17959582 8.40E-189 dispersed
Cam08g1159 Cam-Chr8:17959582 Cam10g1920 Cam-Chr10:33250459 5.40E-120 dispersed
Cam08g1159 Cam-Chr8:17959582 Cam08g1162 Cam-Chr8:17974367 6.60E-09 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1159 K13126 - csv:101219081 1147.5