Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1165 ATGGAAGGGGTAATCCATCAATTTCTTGAACGATGGCTGTTGTACGTTATAGCTATGTGCTTAAGCTTAATAATAGGTAGTTCATTAGTCGCTTCTCTCTCGCCTGATGGAGAAGCGCTTCTCTCTCTCATTGCTGCTACTGGTTCTTCTGTAGCATCATCTTCTTCTGTTCTTGCTTCTTGGAATCCATCTAGCCAAAACCCATGTGCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCACTATCTCTCCCTAAAACATTCCTAAACCTCTCGTTTTTGCCTCCTGAGTTGTCTTCTCTATCTTCTCTGCAACTTCTTAATCTATCATCCACCAATGTATCTGGTTCAATCCCTCCTTCTTTTGGCCTACTCACCCATCTTCGCTTGTTGGACCTTTCTTCCAACAATCTCTATGGCCCTATTCCTCCTCAGCTTGGTTCTCTTTCTTCACTTCAATTCCTTTTCCTTAATTCCAATAGACTGTCTGGTAAGATTCCTCCTCAGCTTTCTAATCTGACTTCTCTGCAAAGTCTTTGCCTCCAAGACAATCAGTTTAACGGCTCCATACCATCGCAGTTTGGTTCTTTGCTGTCCCTCCAAGAGTTTCGAATAGGAGGGAATCCATATCTTTCTGGAGAAATTCCACCACAAATAGGGCTGCTTACTAACCTCACTACATTTGGGGCAGCGGCTACTGCTTTATCTGGGGCTATGCCGTCTACATTTGGGAACCTAATCAACCTCCAAACTTTGTCACTCTATGATACTGAGATGTCGGGTTCAATACCTCCTGAGTTGGGACTTTGTTCCGAGCTAAGGGATTTGTATTTACATATGAACAAGCTCACTGGTAATATTCCTCCTCAGCTGGGTCGGTTGCAGAAGCTAACTAGTTTGTTTCTATGGGGTAATGCTCTATCAGGGGCGATACCATCTGAAATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATCTTTCTGGGGAAATTCCAAGTGATTTGGGGAAGTTAGTTGTTCTTGAACAGTTTCATATATCTGACAATTCAATCTCGGGCTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTTCAGCTTGATAATAATCAATTATCAGGTGTAATTCCATCACAACTTGGCAATTTGAAATCCCTGCAAAGTTTTTTCTTATGGGGCAATTCTGTATCAGGAACTGTACCATCTTCCTTTGGCAACTGCACTGAGTTGTATGCCCTTGATCTTTCAAGAAACAAGCTCACTGGGATTATCCCAGAAGAAATTTTCGGCTTGAAGAAGTTGAGCAAGCTATTGCTCCTTGGAAATTCTTTATCTGGTGGGTTGCCTCAAAGTGTTGCGAATTGTCAATCATTGGTGAGGTTGAGGCTTGGAGAAAACCAGCTTTCAGGCCAGATTCCGAAGGAGGTAGGCCGGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTCGTCTTCCACCTGAGATTGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATAACCGGGGAAATTCCTCCCCAGCTTGGAGAATTGGTGAACTTGGAGCAGCTTGATCTCAGTCGAAACAGCTTCACTGGTGAAATTCCTCAGAGCTTTGGAAATTTCAGTTATTTGAATAAACTTATACTCAATAATAATCTACTGACAGGGTCGATCCCAAAGTCTATTAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTGCAACAGTCTCTCTGGCACAATACCACCAGAAATTGGTTACATGAAGAGCTTGTCTATCAGTTTGGACTTGAGCTCAAACAGGATAAGCGGAGAAATTCCCGAGACGATGTCCAGTTTGACACAGTTACAGTCACTTGATCTTTCCAATAACAGGCTTTATGGAAATATTAAAGTGTTGGGTCTCTTGACTAGTCTCACGTCCCTTAATATCTCCTACAACAATTTCTCAGGTCCCATGCCTGTAACACCATTTTTTAGTACTCTATCAGAAGATTCATATTATCAAAACCTGAATCTCTGTGAATCACTTGATGGGTTTACTTGTTCCTCAAAATCAATGCACAGAAATGGCTTGAAGTCTGCAAAAGCTGCTGCTTTTATCTCCATCATTCTTGCTGCAGTTGTCGTCATACTTTTTGCTTTGTGGATGCTAGTTTCACGAAATCGCAAGTACATGGAACAGAAACATTCTGGGACATTGTCCTCTGCATCGGCCGCCGAGGATTTCTCTTATCCATGGACCTTCATCCCGTTTCAGAAGCTCAACTTTACCATAGATAACATCTTGGAATCAATGAAAGATGAAAATATAATTGGAAAAGGTTGCTCTGGGGTTGTTTATAAAGCAGATATGCCCAATGGTGAATTAGTTGCCGTGAAGAAACTGTGGAAAACAAAGCAAGATGAAGAAGCAGTCGACTCGTGTGCTGCAGAGATTCAAATTCTCGGGCATATTCGACATCGTAACATTGTGAAACTCATAGGTTATTGTTCCAATAGAAGTGTCAAGATACTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTGCAAGGAAACAGAAATCTGGACTGGGAGACAAGGTATAAAATTGCAGTTGGGACGGCTCAGGGATTGGCTTATCTTCATCATGATTGCGTGCCTGCAATTCTTCACAGAGATGTCAAATGCAATAACATACTTCTAGACTCAAAGTTTGAAGCTTATCTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACCCCAAGTTATCACCATGCGATTTCGAGAGTAGCCGGTTCTTACGGATATATCGCCCCAGAATACGGATATACCATGAACATCACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTTTACTAGAGATACTAAGTGGGCGTAGTGCAATTGAGACACAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTGAAGAAGAAGATGTCAAGTTTCGAACCCGCCATAACGATACTCGATACAAAGCTCCAGGGTTTACCAGATCAGATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCAATGTTTTGTGTGAACTCTTCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGGAAAACCTCCCAACCTCTAATAAAGCAGTCCTCAAATTTAAGTTCAAATAATACTCTCTTTTCCACAAGAAAATTGGGGGAGACAGTGGAGAGCATGCTTTTACCTTACTGTGGAGGGCACATGCCTGATGACACAAATCTTGTTTCCTTTCCAGAAGCCATAACCTGA 3378 41.89 MEGVIHQFLERWLLYVIAMCLSLIIGSSLVASLSPDGEALLSLIAATGSSVASSSSVLASWNPSSQNPCAWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPPSFGLLTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLSNLTSLQSLCLQDNQFNGSIPSQFGSLLSLQEFRIGGNPYLSGEIPPQIGLLTNLTTFGAAATALSGAMPSTFGNLINLQTLSLYDTEMSGSIPPELGLCSELRDLYLHMNKLTGNIPPQLGRLQKLTSLFLWGNALSGAIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHISDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSQLGNLKSLQSFFLWGNSVSGTVPSSFGNCTELYALDLSRNKLTGIIPEEIFGLKKLSKLLLLGNSLSGGLPQSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGRLPPEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPQSFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSCNSLSGTIPPEIGYMKSLSISLDLSSNRISGEIPETMSSLTQLQSLDLSNNRLYGNIKVLGLLTSLTSLNISYNNFSGPMPVTPFFSTLSEDSYYQNLNLCESLDGFTCSSKSMHRNGLKSAKAAAFISIILAAVVVILFALWMLVSRNRKYMEQKHSGTLSSASAAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKILLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPSYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQVGDGLHIVEWVKKKMSSFEPAITILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLSSNNTLFSTRKLGETVESMLLPYCGGHMPDDTNLVSFPEAIT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17985991 17990822 - CaPI482276_08g011650.1 Cam08g1165 133216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1165 1125 Gene3D Ribonuclease Inhibitor 290 386 IPR032675 -
Cam08g1165 1125 Gene3D Ribonuclease Inhibitor 484 578 IPR032675 -
Cam08g1165 1125 Gene3D Ribonuclease Inhibitor 387 483 IPR032675 -
Cam08g1165 1125 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Cam08g1165 1125 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 371 393 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 491 512 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 615 634 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 659 675 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 516 537 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 SMART LRR_typ_2 489 512 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 176 200 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 585 609 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 537 560 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 297 321 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 152 175 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 634 659 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 417 441 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 393 416 IPR003591 -
Cam08g1165 1125 SMART LRR_typ_2 128 151 IPR003591 -
Cam08g1165 1125 SUPERFAMILY L domain-like 61 407 - -
Cam08g1165 1125 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1165 1125 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515(InterPro)
Cam08g1165 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g1165 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 434 - -
Cam08g1165 1125 PRINTS Leucine-rich repeat signature 420 433 - -
Cam08g1165 1125 PRINTS Leucine-rich repeat signature 634 647 - -
Cam08g1165 1125 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524(InterPro)
Cam08g1165 1125 SUPERFAMILY L domain-like 386 698 - -
Cam08g1165 1125 Gene3D Phosphorylase Kinase; domain 1 752 864 - -
Cam08g1165 1125 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 196 - -
Cam08g1165 1125 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1165 1125 FunFam Piriformospora indica-insensitive protein 2 435 523 - -
Cam08g1165 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 865 1077 - -
Cam08g1165 1125 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Cam08g1165 1125 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 864 - -
Cam08g1165 1125 SMART serkin_6 787 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1165 1125 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 524 707 - -
Cam08g1165 1125 PANTHER LEUCINE RICH REPEAT KINASE 2 367 1061 IPR051420 -
Cam08g1165 1125 Gene3D Ribonuclease Inhibitor 579 704 IPR032675 -
Cam08g1165 1125 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Cam08g1165 1125 Gene3D Transferase(Phosphotransferase) domain 1 865 1079 - -
Cam08g1165 1125 SUPERFAMILY Protein kinase-like (PK-like) 771 1060 IPR011009 -
Cam08g1165 1125 ProSiteProfiles Leucine-rich repeat profile. 636 658 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0776 Cam-Chr6:10474972 Cam08g1165 Cam-Chr8:17985991 1.20E-79 dispersed
Cam07g1697 Cam-Chr7:31705775 Cam08g1165 Cam-Chr8:17985991 1.30E-86 dispersed
Cam08g1165 Cam-Chr8:17985991 Cam09g0974 Cam-Chr9:10058040 2.10E-103 dispersed
Cam08g1165 Cam-Chr8:17985991 Cam06g0789 Cam-Chr6:10651480 2.30E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85368 PF00069 Pkinase 1.60E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1165 - - - 0.0