Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1194 ATGGCGAAGAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTTGCTTTTTCTGTATGTAACTGTGTTGACGGTGATCGGGTACAAATCGGAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCCAATGGGCTTGCCGATGACTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCCGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA 864 51.39 MAKNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATLLFLYVTVLTVIGYKSETDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADDYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18281454 18284822 - CaPI482276_08g011940.1 Cam08g1194 133245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1194 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Cam08g1194 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Cam08g1194 287 NCBIfam MIP family channel protein 41 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cam08g1194 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 CDD MIP 37 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam08g1194 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cam08g1194 287 FunFam Probable aquaporin PIP1-2 22 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0829 Cam-Chr4:22543175 Cam08g1194 Cam-Chr8:18281454 7.80E-80 dispersed
Cam08g1194 Cam-Chr8:18281454 Cam10g2153 Cam-Chr10:35051659 1.20E-100 dispersed
Cam10g1998 Cam-Chr10:33871730 Cam08g1194 Cam-Chr8:18281454 1.50E-117 wgd
Cam04g0824 Cam-Chr4:22508411 Cam08g1194 Cam-Chr8:18281454 3.90E-112 wgd
Cam05g2298 Cam-Chr5:31095131 Cam08g1194 Cam-Chr8:18281454 1.00E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1194 K09872 - csv:101205700 516.153