Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1201 ATGATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGACCAATGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCATAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCAGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTCGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAATGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCTTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCAATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTGTATTTGATCACCTTCCAATGCCATCGTTTTCCACCAATATCTTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACCGCTTCCGGGACAATTTCCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCAGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCAGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAATGGTCAAGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTTAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATGCTCAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCTCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACATTAG 2079 44.54 MMNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRTNEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAMLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINVSPFSPPRKKPRLPIPAETSVFDHLPMPSFSTNIFDTTNPLLSITANKIPAGIQGARHTQFGLSSPNLQISKPLPGQFPPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSHWLTMGNHIQSSKESSKESKETKPTHIILFGQLIFPNQQNSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRKLGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRH 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18321638 18324119 - CaPI482276_08g012010.1 Cam08g1201 133252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1201 692 Gene3D - 603 687 - -
Cam08g1201 692 MobiDBLite consensus disorder prediction 545 597 - -
Cam08g1201 692 Gene3D - 321 392 - -
Cam08g1201 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 684 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam08g1201 692 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677(InterPro)
Cam08g1201 692 CDD B3_DNA 122 223 IPR003340 GO:0003677(InterPro)
Cam08g1201 692 ProSiteProfiles PB1 domain profile. 604 684 IPR053793 -
Cam08g1201 692 Gene3D - 121 225 IPR015300 -
Cam08g1201 692 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677(InterPro)
Cam08g1201 692 FunFam Auxin response factor 121 225 - -
Cam08g1201 692 Pfam Auxin response factor 282 365 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam08g1201 692 SUPERFAMILY DNA-binding pseudobarrel domain 111 226 IPR015300 -
Cam08g1201 692 SMART B3_2 123 225 IPR003340 GO:0003677(InterPro)
Cam08g1201 692 FunFam Auxin response factor 320 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2191 Cam-Chr2:34648263 Cam08g1201 Cam-Chr8:18321638 1.20E-211 dispersed
Cam07g0833 Cam-Chr7:20827098 Cam08g1201 Cam-Chr8:18321638 2.30E-09 dispersed
Cam08g1201 Cam-Chr8:18321638 Cam08g1540 Cam-Chr8:21634746 1.70E-92 dispersed
Cam04g0816 Cam-Chr4:22439109 Cam08g1201 Cam-Chr8:18321638 5.90E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52404 PF02362 B3 4.10E-20 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1201 K14486 - csv:101204568 1193.33