Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1206 ATGGAATTCCATCCGGAAAATGGCAACCATGGATCCGTGAAGGAGACCTCTTTGTGTGGCGACGTGGCGGCGTATTGGAGCAGTGCAGCGAAGGGGCTCGAGCGGAGTCATGTGGAGGAGTTTAAGCGTATGGTCATGGAATTTCGTCGCCCTATTGTGCGACTTGGAGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCTATTGCTACCCGTGCCTTTGATGTTGCAGTGGAGCTCTCTGAGGAGGCTCGTCCTGCCGTGGAGGCAAGTAGTAGGTGGGTTGTTAAAAGTATGACTAATGGAACCGACAGTTATGGTGTTACGACTGGTTTTGGTTCTACGTCGCATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAGCTCATTAGATTCTTAAACGCTGGAATTTTTGGAAACGATCCAAATTCTTGCCATACATTGCCACAACAAGCAACCAGAGCTGCCATGGTGGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGTACCATTACAGCTTCTGGTGACCTGGTTCCTCTCTCATATATTGCTGGGCTTTTGACTGGTCGACCTAATTCTAAGGCCATTGGGCCTAACGGTGACTCTCTTAACCCAATTGAGGCATTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCAACTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCAAATTTTCTTGCTATCCTTTCTGAGATCTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCTTATGTCAAAAGTGCTAAAAAATTGCACGAAACTGACTCGCTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCATTGATTGATGTGTCGAGAAACAAGGCTTTGCATGGAGGAAATTTCCAAGGCACTCCCATTGGCGTGTCCATGGATAATACTCGTTTAGCCATTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTTAATGACTTCTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCAAGTTTGGATTACGGGTTTAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAGCCATGTCCAAAGCGCCGAACAACATAACCAAGACGTAAACTCATTGGGGTTGATATCATCGAGAAAGACAGCGGAAGCTGTTGAGATTTTAAAGCTTATGTCCACTACTTATTTGGTTGCATTATGCCAAGCTATTGATTTAAGACACATAGAGGAGATTTTGAAGAAAACAGTAAAGAACACCGTTAGCCAAGTGGCAAAAAAGATTCTGGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGGCATAGTGAAAAGGATTTGCTTCAAGTCGTAGACAGAGAACACGTTTTTGCCTATATTGATGATCCTTGCAGTGCTTCATATCCATTGATGCAAAAGCTAAGACAAGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAAAGAAAACAACCCAAGTGCTTCAATCTTCCAAAAGATCACTGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAAAGCAGATCTTATCCACTGTACAAGTTCGTTAGAGAAACGTTGGGAACTCAATTGTTGACTGGCGAGAAAGATGTTTCGCCAGGAGAAGAATTAGATAAGGTTTTTTCAGCTATTTCTTATGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAAGATTGGAATGGTGCTCCCCTTCCTCTTAGTTAG 2142 42.34 MEFHPENGNHGSVKETSLCGDVAAYWSSAAKGLERSHVEEFKRMVMEFRRPIVRLGGESLTIAQVAAIATRAFDVAVELSEEARPAVEASSRWVVKSMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGNDPNSCHTLPQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGDSLNPIEAFHLAGISGGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSTTYLVALCQAIDLRHIEEILKKTVKNTVSQVAKKILVLHFNGNLHPIRHSEKDLLQVVDREHVFAYIDDPCSASYPLMQKLRQVLVDHALKNGEKENNPSASIFQKITAFEDELKALLPKEVENARMEVEKGSPTIENQIKESRSYPLYKFVRETLGTQLLTGEKDVSPGEELDKVFSAISYGKLIDPMLECLKDWNGAPLPLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18417301 18421508 + CaPI482276_08g012060.1 Cam08g1206 133257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1206 713 SUPERFAMILY L-aspartase-like 25 712 IPR008948 GO:0003824(InterPro)
Cam08g1206 713 CDD PAL-HAL 58 523 IPR001106 -
Cam08g1206 713 Gene3D - 526 647 IPR023144 -
Cam08g1206 713 PANTHER HISTIDINE AMMONIA-LYASE 21 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cam08g1206 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Cam08g1206 713 FunFam Phenylalanine ammonia-lyase 260 542 - -
Cam08g1206 713 Gene3D - 16 259 IPR024083 -
Cam08g1206 713 NCBIfam phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cam08g1206 713 FunFam Phenylalanine ammonia-lyase 14 259 - -
Cam08g1206 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cam08g1206 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cam08g1206 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1373 Cam-Chr7:28113390 Cam08g1206 Cam-Chr8:18417301 0.00E+00 dispersed
Cam07g1374 Cam-Chr7:28118146 Cam08g1206 Cam-Chr8:18417301 0.00E+00 dispersed
Cam02g2199 Cam-Chr2:34758319 Cam08g1206 Cam-Chr8:18417301 0.00E+00 transposed
Cam03g1546 Cam-Chr3:30402102 Cam08g1206 Cam-Chr8:18417301 6.80E-233 transposed
Cam04g0805 Cam-Chr4:22357412 Cam08g1206 Cam-Chr8:18417301 1.10E-304 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1206 K10775 - csv:101206890 1289.63