Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1230 ATGTTTGCTACTACTGGCATTCTCTTCTTCATCTGGTTTCTGAGCTCCACTCTGCCTTCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCAGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATTTCCAGAAGACAAATGCTGTCCGTTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGACTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACCTATCCCGGAGACGAAAGCTCCTCCAGCAGCTCGGGATCCAGTGGCAGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCGCCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGGTCTGTACACAAACTCGAACTACGATGCTTTATTATCATCAACATTGTCATTGTAG 1500 51.6 MFATTGILFFIWFLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRSVNDSISRRQMLSVHSKGQSNSCQTGNPIDDCWRCDSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDESSSSSSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLGLYTNSNYDALLSSTLSL 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18675532 18681364 - CaPI482276_08g012300.1 Cam08g1230 133281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1230 499 PANTHER PECTATE LYASE 18-RELATED 32 416 IPR045032 GO:0030570(InterPro)
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cam08g1230 499 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cam08g1230 499 MobiDBLite consensus disorder prediction 416 444 - -
Cam08g1230 499 Pfam Pectate lyase 157 338 IPR002022 -
Cam08g1230 499 SMART amb_all 149 346 IPR002022 -
Cam08g1230 499 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Cam08g1230 499 Gene3D - 74 416 IPR012334 -
Cam08g1230 499 FunFam Pectate lyase 74 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0871 Cam-Chr4:22867350 Cam08g1230 Cam-Chr8:18675532 1.40E-40 dispersed
Cam04g0961 Cam-Chr4:23668461 Cam08g1230 Cam-Chr8:18675532 1.10E-178 dispersed
Cam08g1230 Cam-Chr8:18675532 Cam08g2221 Cam-Chr8:27475673 2.50E-141 dispersed
Cam05g2332 Cam-Chr5:31373001 Cam08g1230 Cam-Chr8:18675532 5.30E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1230 K01728 - csv:101207535 918.687