Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1335 ATGGCAATGATAGCGGCGGGCAACTTTGCAGTGAAAGAAAAATTAGAGTTTCTTCTTAAGGTTCTTTTATGTTTGTACATATTGTCCATGAAGGCCATAATTTTTAGTTCTCGACAAATTTTAACTTCCAAAAAGTTTCGAGGCTTGGTTTCTGCGACCCACAAATATTTTAACCGTTGTAAAGTTGAAGTCTTTTCTAAAGAAGTGTGCGAGATAATATTGGACCAGTATCCTGACATCAAAACATTGAAGAAACTCCACTCCAAGATTGTTGTTAATGAACATCTTCGAATTGACCCAACTCTTGCTATTAAGCTTATGAGAGCTTACTCTTCTTATGGGGAAACAAGTGTTTCCCGATGCATATTTGATAGTTCTCTTGAAAAGAATGTTGTCTTTTTCAATGTCATGATACGAAGTTATGTGAACAACAACTTGTATGTTGAAGCTCTTTCCATTTATCAAGTCATGTCAAGTTGTGCTTTTAATCCTGATCATTACACATTCCCTTGTGTTTTGAAGGCATGTTCTGGATTGGATAATTTGAGGGTTGGGTTGCAAGTTCATGATGCAATAGTGAAAGTTGGTCTTGACTCAAATTTATTTATTGGTAATGCTTTGGTAGCCATGTATGGTAAATGTGGTTGTTTGAGGGAGGCTCGAAAAGTTCTTGATCAAATGCCAAATAGAGATGTGGTTTCTTGGAATTCAATGGTTGCAGGGTATGCACAAAGTGGGCAATTTGACGATGCATTGGAAATTTGTAAGGAAATGGATTCTCTAAAGCTAAATCATGATGCTGGTACAATGGCTAGCCTTTTGCCTGTTGTGTGTTATACATCATTGGAAAATGTTCAGTATATCCATAACATGTTTGAGAGGATGGCTAGGAAGAGTTTGGTCTCATGGAACGTGATGATAGCAGTATATGTGAATAACTCTATGCCAAACGAAGCCATTAGTTTATTTTTGCAAATGGAGGAATGTGGGATGAAACCAGATGCAGTTACAATTGCGAGCCTTCTTCCAGCTTGCGGGGACCTTTCAGCTCTATCTCTAGGAAGACGTCTCCACAAATATATTGAGGACAATCTTCGGCCGAATTTGTTACTCGAGAATGCATTACTTGACATGTATGCTAAGTGCGGATGTTTAGAAGAAGCTAGGGATGTATTTGATAAAATGAAATTGCGAGATGTTGTGTCATGGACATCAATGATGTCTGCATATGGAAGAAGTGGTCAAGGCTATGATGCAGTGGCACTCTTTACAAAAATGCTAGACTCGGGTCTAAATCCAGATTCCATTGCTTTTGTTTCTGTACTCTCTGCTTGTAGTCATGCAGGATTGTTGGACCAAGGGCGTCATTACTTCCATGTGATGACGGAACAATACAGGATAGTTCCTAGGATAGAACACTTTGCTTGCATGGTAGATCTATTCGGCCGAGCTGGTGAAGTCAAAGAAGCATATAATTTCATCAAGCAGATGCCAATGGAACCAAATGAAAGAGTTTGGGGTGCGCTCTTGAGTGCTTGCCGAGTGCATTCGAAGATGGATATTGGACTTGTAGCTGCTGATTGTCTTTTCAAATTGGCCCCTAAGCAATCGGGCTACTATGTCTTGTTATCAAACATTTATGCAAAGGCGGGTATGTGGAAAGATGTAATGAATGTTCGATATGCAATGAAGAAGATAGGAATTAAGAAAGTGCCTGGCATTAGTAATGTTGAACTTAATGGTCAAGTTCATACATTTCTTGCTGGTGATCAATATCATCCACAAGCAAAGAATATATATGAAGAATTGGATGTATTAGTAGGGAAAATGAAGGAGTTAGGTTACATTCCTCAAACTGAGTCTGCTCTCCATGATGTGGAGGTTGAGGATAAAGAATGTCATCTAGCTATTCATAGTGAAAAATTGGCCGTTGTCTTTGCCATTTTAAACACGAAACATGGTACACCAATTCGAATTACGAAGAACCTTCGTGTTTGTGGGGATTGCCATATTGCTATTAAACTTATGTCGAAAATAGTGTCACGCGACATTATTGTTAGAGATTGCAATCGTTTTCACCATTTCAGTAATGGAATATGCTCATGTGGAGATTACTGTGCCGTAGTATTGCCCAGCTCTACAGCGCTTTATCGTAGTATTGCATCTCTGAAGGTTAGTGTCCACGCGCATTCCTCTACGGTGTATCCCCAAGGTGCTCTCAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCTCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGGCGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGTTTTATTTATTTATTTAAAATTAGCTGCACATATATATGGCAAAGCTCATAATTTTGTTCTTGTTTGTGTTGTGATATGTGATGATGATCAACCCATTGACATTGAAATAAATGGAGCAGTTTATTTAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAATTTTTCGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTCATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCTCCACCTCTCTCCATTACTCCACTCTACCAATGTCGCAAATTTAA 3396 39.99 MAMIAAGNFAVKEKLEFLLKVLLCLYILSMKAIIFSSRQILTSKKFRGLVSATHKYFNRCKVEVFSKEVCEIILDQYPDIKTLKKLHSKIVVNEHLRIDPTLAIKLMRAYSSYGETSVSRCIFDSSLEKNVVFFNVMIRSYVNNNLYVEALSIYQVMSSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDSNLFIGNALVAMYGKCGCLREARKVLDQMPNRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLKLNHDAGTMASLLPVVCYTSLENVQYIHNMFERMARKSLVSWNVMIAVYVNNSMPNEAISLFLQMEECGMKPDAVTIASLLPACGDLSALSLGRRLHKYIEDNLRPNLLLENALLDMYAKCGCLEEARDVFDKMKLRDVVSWTSMMSAYGRSGQGYDAVALFTKMLDSGLNPDSIAFVSVLSACSHAGLLDQGRHYFHVMTEQYRIVPRIEHFACMVDLFGRAGEVKEAYNFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADCLFKLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYEELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAVVFAILNTKHGTPIRITKNLRVCGDCHIAIKLMSKIVSRDIIVRDCNRFHHFSNGICSCGDYCAVVLPSSTALYRSIASLKVSVHAHSSTVYPQGALRASRDGGELLLLPPQLVVEMLNHTSQWQIIPLPQKEAPGFVELADIDGRGDLKLIYGTKGLGIQHKGRRENKVLFIYLKLAAHIYGKAHNFVLVCVVICDDDQPIDIEINGAVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLSTSLHYSTLPMSQI 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19639220 19663421 - CaPI482276_08g013350.1 Cam08g1335 133386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1335 1131 MobiDBLite consensus disorder prediction 990 1015 - -
Cam08g1335 1131 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Cam08g1335 1131 NCBIfam pentatricopeptide repeat 233 263 IPR002885 -
Cam08g1335 1131 NCBIfam pentatricopeptide repeat 301 335 IPR002885 -
Cam08g1335 1131 NCBIfam pentatricopeptide repeat 373 401 IPR002885 -
Cam08g1335 1131 NCBIfam pentatricopeptide repeat 401 435 IPR002885 -
Cam08g1335 1131 NCBIfam pentatricopeptide repeat 134 165 IPR002885 -
Cam08g1335 1131 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 398 IPR002885 -
Cam08g1335 1131 ProSiteProfiles AP2/ERF domain profile. 921 979 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 Pfam E motif 516 578 IPR046848 -
Cam08g1335 1131 Pfam PPR repeat family 129 176 IPR002885 -
Cam08g1335 1131 Pfam PPR repeat family 398 446 IPR002885 -
Cam08g1335 1131 Pfam PPR repeat family 299 345 IPR002885 -
Cam08g1335 1131 SUPERFAMILY DNA-binding domain 920 981 IPR016177 GO:0003677(InterPro)
Cam08g1335 1131 SUPERFAMILY DNA-binding domain 853 886 IPR016177 GO:0003677(InterPro)
Cam08g1335 1131 Pfam PPR repeat 233 260 IPR002885 -
Cam08g1335 1131 Pfam PPR repeat 476 498 IPR002885 -
Cam08g1335 1131 Pfam PPR repeat 205 231 IPR002885 -
Cam08g1335 1131 Gene3D Tetratricopeptide repeat domain 73 180 IPR011990 GO:0005515(InterPro)
Cam08g1335 1131 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cam08g1335 1131 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Cam08g1335 1131 FunFam Pentatricopeptide repeat-containing protein At2g29760, chloroplastic 414 675 - -
Cam08g1335 1131 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Cam08g1335 1131 Gene3D AP2/ERF domain 818 887 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 Gene3D AP2/ERF domain 920 981 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 ProSiteProfiles AP2/ERF domain profile. 804 885 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 Pfam E+ motif 583 608 IPR046849 -
Cam08g1335 1131 FunFam AP2-like ethylene-responsive transcription factor 920 981 - -
Cam08g1335 1131 MobiDBLite consensus disorder prediction 992 1015 - -
Cam08g1335 1131 SMART rav1_2 816 891 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 SMART rav1_2 921 985 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 PANTHER OS07G0578800 PROTEIN-RELATED 278 599 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cam08g1335 1131 Gene3D Tetratricopeptide repeat domain 281 350 IPR011990 GO:0005515(InterPro)
Cam08g1335 1131 Gene3D Tetratricopeptide repeat domain 181 280 IPR011990 GO:0005515(InterPro)
Cam08g1335 1131 FunFam Pentatricopeptide repeat-containing protein 134 278 - -
Cam08g1335 1131 CDD AP2 920 981 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 Pfam AP2 domain 920 971 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1335 1131 Gene3D Tetratricopeptide repeat domain 462 645 IPR011990 GO:0005515(InterPro)
Cam08g1335 1131 Gene3D Tetratricopeptide repeat domain 351 461 IPR011990 GO:0005515(InterPro)
Cam08g1335 1131 Pfam DYW family of nucleic acid deaminases 614 705 IPR032867 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1783 Cam-Chr2:30960710 Cam08g1335 Cam-Chr8:19639220 2.50E-73 dispersed
Cam08g1335 Cam-Chr8:19639220 Cam10g2210 Cam-Chr10:35456975 4.70E-135 dispersed
Cam10g1193 Cam-Chr10:25336420 Cam08g1335 Cam-Chr8:19639220 3.80E-68 dispersed
Cam11g0921 Cam-Chr11:13512729 Cam08g1335 Cam-Chr8:19639220 2.20E-52 dispersed
Cam08g1327 Cam-Chr8:19575725 Cam08g1335 Cam-Chr8:19639220 6.40E-89 proximal
Cam02g0408 Cam-Chr2:4821698 Cam08g1335 Cam-Chr8:19639220 6.70E-63 transposed
Cam03g0274 Cam-Chr3:3871865 Cam08g1335 Cam-Chr8:19639220 6.20E-114 transposed
Cam08g0114 Cam-Chr8:2064745 Cam08g1335 Cam-Chr8:19639220 4.10E-97 transposed
Cam10g1775 Cam-Chr10:31815938 Cam08g1335 Cam-Chr8:19639220 1.80E-06 transposed
Cam05g2410 Cam-Chr5:32098728 Cam08g1335 Cam-Chr8:19639220 8.70E-58 wgd
Cam05g2625 Cam-Chr5:33767844 Cam08g1335 Cam-Chr8:19639220 3.90E-123 wgd
Cam06g1763 Cam-Chr6:28826734 Cam08g1335 Cam-Chr8:19639220 5.60E-106 wgd
Cam08g1335 Cam-Chr8:19639220 Cam09g1859 Cam-Chr9:33139738 7.40E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52417 PF14432 DYW_deaminase 5.90E-41 CL0109 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1335 - - - 0.0