Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1349 ATGGTTGGCTTTAGAACCTTGTTTGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATGGCCCAAGATGCCTACAATCCTGATCCCGAACTTGTTACCGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGGAAATATAAAGGACCATGTTTGGCCACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCATCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAACATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG 1308 47.78 MVGFRTLFVCSLLFFVVANADVDEDEYWRNRAAEAQKMAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKRKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLACAPRKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19764636 19766199 + CaPI482276_08g013490.1 Cam08g1349 133400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1349 435 Gene3D - 83 428 IPR012334 -
Cam08g1349 435 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570(InterPro)
Cam08g1349 435 PANTHER PECTATE LYASE 18-RELATED 18 430 IPR045032 GO:0030570(InterPro)
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cam08g1349 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cam08g1349 435 SMART amb_all 158 355 IPR002022 -
Cam08g1349 435 Pfam Pectate lyase 168 349 IPR002022 -
Cam08g1349 435 SUPERFAMILY Pectin lyase-like 75 397 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1493 Cam-Chr1:28470109 Cam08g1349 Cam-Chr8:19764636 2.50E-177 dispersed
Cam08g1349 Cam-Chr8:19764636 Cam10g1195 Cam-Chr10:25357712 2.50E-185 dispersed
Cam08g1349 Cam-Chr8:19764636 Cam05g2653 Cam-Chr5:34010859 7.90E-192 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1349 K01728 - csv:101217922 822.002