Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1356 ATGCTACCCAATGTGGCCTTTAGTGCCCTGGAGCCTCGACCCACGCTACATTGGTGTCAGAACGAACCGGATGGCCCACTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCAAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAATTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGTGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACAGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGATGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAAATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGCAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGCTTACTCTGA 3822 42.44 MLPNVAFSALEPRPTLHWCQNEPDGPLCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLEQTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLMVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASLL 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19840100 19848233 - CaPI482276_08g013560.1 Cam08g1356 133407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1356 1273 SUPERFAMILY PYP-like sensor domain (PAS domain) 223 335 IPR035965 -
Cam08g1356 1273 SUPERFAMILY GAF domain-like 347 546 - -
Cam08g1356 1273 Gene3D PAS domain 760 897 - -
Cam08g1356 1273 Pfam Phytochrome region 562 736 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 CDD PAS 909 1020 IPR000014 -
Cam08g1356 1273 ProSiteProfiles PAS repeat profile. 898 950 IPR000014 -
Cam08g1356 1273 NCBIfam PAS domain S-box protein 772 888 IPR000014 -
Cam08g1356 1273 Pfam PAS fold 898 1020 IPR013767 GO:0006355(InterPro)
Cam08g1356 1273 Pfam PAS fold 768 882 IPR013767 GO:0006355(InterPro)
Cam08g1356 1273 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 367 539 IPR016132 -
Cam08g1356 1273 SMART HisKA_10 1042 1106 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam08g1356 1273 MobiDBLite consensus disorder prediction 148 168 - -
Cam08g1356 1273 FunFam Phytochrome 761 892 - -
Cam08g1356 1273 ProSiteProfiles PAS repeat profile. 765 835 IPR000014 -
Cam08g1356 1273 Gene3D PAS domain 912 1026 - -
Cam08g1356 1273 Gene3D - 554 727 IPR043150 -
Cam08g1356 1273 Pfam GAF domain 370 548 IPR003018 GO:0005515(InterPro)
Cam08g1356 1273 Coils Coil 546 566 - -
Cam08g1356 1273 ProSiteProfiles Histidine kinase domain profile. 1049 1268 IPR005467 -
Cam08g1356 1273 PANTHER OS08G0260000 PROTEIN 150 1143 - -
Cam08g1356 1273 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1154 1264 IPR003594 -
Cam08g1356 1273 FunFam Phytochrome 554 685 - -
Cam08g1356 1273 Pfam PAS fold 218 334 IPR013654 GO:0006355(InterPro)
Cam08g1356 1273 ProSitePatterns Phytochrome chromophore attachment site signature. 467 476 IPR013516 -
Cam08g1356 1273 SMART HKATPase_4 1154 1266 IPR003594 -
Cam08g1356 1273 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1100 1261 IPR036890 -
Cam08g1356 1273 CDD HATPase_Phy-like 1153 1264 IPR044767 -
Cam08g1356 1273 SMART pas_2 897 966 IPR000014 -
Cam08g1356 1273 SMART pas_2 767 833 IPR000014 -
Cam08g1356 1273 SUPERFAMILY PYP-like sensor domain (PAS domain) 912 1018 IPR035965 -
Cam08g1356 1273 Gene3D - 1105 1270 IPR036890 -
Cam08g1356 1273 SUPERFAMILY GAF domain-like 557 734 - -
Cam08g1356 1273 PRINTS Phytochrome signature 664 683 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 282 304 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 860 877 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 880 900 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 787 802 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 467 488 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 579 599 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 697 715 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 382 401 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 PRINTS Phytochrome signature 768 784 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1356 1273 Gene3D PAS domain 223 470 - -
Cam08g1356 1273 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 878 IPR035965 -
Cam08g1356 1273 Gene3D - 348 710 IPR029016 -
Cam08g1356 1273 SMART gaf_1 367 559 IPR003018 GO:0005515(InterPro)
Cam08g1356 1273 CDD PAS 776 882 IPR000014 -
Cam08g1356 1273 Pfam His Kinase A (phospho-acceptor) domain 1043 1103 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1356 K12120 - - csv:101208491 2154.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0302 Cam-Chr2:3756689 Cam08g1356 Cam-Chr8:19840100 0.00E+00 dispersed
Cam05g0774 Cam-Chr5:6748343 Cam08g1356 Cam-Chr8:19840100 0.00E+00 dispersed
Cam08g1356 Cam-Chr8:19840100 Cam08g1359 Cam-Chr8:19880663 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0064 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1442.2
Cam11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cam01g0683 . 24 971 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1298.5
Cam02g0287 . 279 1231 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Cam06g0005 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 4.3e-268 921.4
Cam02g0887 . 304 1248 Histidine Kinase Gene Family AT2G01830 51.7 8.5e-264 907.1
Cam05g1764 . 1 997 Histidine Kinase Gene Family AT5G10720 57.2 3.2e-291 998.0
Cam08g1356 . 150 1269 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Cam08g1359 . 6 1137 Histidine Kinase Gene Family AT1G09570 70.0 0.0e+00 1577.0
Cam02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1202.2
Cam05g0774 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.9
Cam05g0774 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Cam03g0721 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1240.7
Cam08g1356 . 170 1203 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1089.3
Cam02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.1
Cam02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1361.3
Cam05g0774 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1152.5
Cam08g1356 . 158 1263 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1116.3
Cam05g0774 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.3
Cam03g0721 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.8 0.0e+00 1280.4
Cam08g1356 . 157 1264 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.3
Cam02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1115.5
Cam03g0721 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1370.9
Cam05g0774 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1271.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56