Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1357 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGATTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGGTAG 897 47.38 MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEDSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19864043 19866300 + CaPI482276_08g013570.1 Cam08g1357 133408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1357 298 MobiDBLite consensus disorder prediction 130 150 - -
Cam08g1357 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 252 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam08g1357 298 MobiDBLite consensus disorder prediction 104 125 - -
Cam08g1357 298 SMART finulus 183 233 IPR011598 GO:0046983(InterPro)
Cam08g1357 298 Coils Coil 224 244 - -
Cam08g1357 298 CDD bHLH_AtBPE_like 167 252 - -
Cam08g1357 298 MobiDBLite consensus disorder prediction 86 165 - -
Cam08g1357 298 Gene3D - 174 246 IPR036638 GO:0046983(InterPro)
Cam08g1357 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983(InterPro)
Cam08g1357 298 FunFam Basic helix-loop-helix transcription factor 174 246 - -
Cam08g1357 298 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983(InterPro)
Cam08g1357 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0519 Cam-Chr2:5910378 Cam08g1357 Cam-Chr8:19864043 6.50E-35 dispersed
Cam02g1763 Cam-Chr2:30763674 Cam08g1357 Cam-Chr8:19864043 5.70E-17 dispersed
Cam08g1357 Cam-Chr8:19864043 Cam09g0835 Cam-Chr9:8577032 1.30E-33 dispersed
Cam06g1802 Cam-Chr6:29118878 Cam08g1357 Cam-Chr8:19864043 1.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52420 PF00010 HLH 2.50E-08 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1357 - - - 0.0