Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1359 ATGTCATCAACAGGTAGACCAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCGCCGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCACGACGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCTGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTATGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCGTGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCAGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGATTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTTGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTGCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCACTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGCTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3414 42.36 MSSTGRPSQSSRNTGRGSSSSSQSRHISRILTQTSIDAKLQSHFEQSGPSFDYSTSIHLTTNPTAAPPPAAAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPFYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASMVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHRDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGFSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIELGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLHKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSCCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGCYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGVEQKQLLHNSVNCQRQISKLLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAACS 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19880663 19887498 + CaPI482276_08g013590.1 Cam08g1359 133410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1359 1137 Gene3D - 207 576 IPR029016 -
Cam08g1359 1137 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Cam08g1359 1137 Pfam Phytochrome region 429 602 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Cam08g1359 1137 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cam08g1359 1137 SMART pas_2 635 701 IPR000014 -
Cam08g1359 1137 SMART pas_2 762 832 IPR000014 -
Cam08g1359 1137 NCBIfam PAS domain S-box protein 640 756 IPR000014 -
Cam08g1359 1137 SUPERFAMILY GAF domain-like 424 600 - -
Cam08g1359 1137 CDD PAS 774 887 IPR000014 -
Cam08g1359 1137 ProSiteProfiles PAS repeat profile. 633 703 IPR000014 -
Cam08g1359 1137 Pfam His Kinase A (phospho-acceptor) domain 912 973 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam08g1359 1137 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Cam08g1359 1137 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1131 IPR036890 -
Cam08g1359 1137 PANTHER OS08G0260000 PROTEIN 8 1010 - -
Cam08g1359 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Cam08g1359 1137 FunFam Phytochrome 421 549 - -
Cam08g1359 1137 ProSiteProfiles Histidine kinase domain profile. 916 1135 IPR005467 -
Cam08g1359 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 885 IPR035965 -
Cam08g1359 1137 Gene3D PAS domain 81 329 - -
Cam08g1359 1137 SMART HisKA_10 909 974 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam08g1359 1137 CDD PAS 644 750 IPR000014 -
Cam08g1359 1137 MobiDBLite consensus disorder prediction 1 26 - -
Cam08g1359 1137 PIRSF Phytochrome_conventional 7 1137 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cam08g1359 1137 Gene3D PAS domain 628 766 - -
Cam08g1359 1137 PRINTS Phytochrome signature 636 652 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 748 768 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 563 581 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 530 549 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 728 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 655 670 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 Gene3D - 421 593 IPR043150 -
Cam08g1359 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Cam08g1359 1137 Coils Coil 413 433 - -
Cam08g1359 1137 Gene3D - 953 1129 IPR036890 -
Cam08g1359 1137 Pfam PAS fold 766 887 IPR013767 GO:0006355(InterPro)
Cam08g1359 1137 Pfam PAS fold 636 750 IPR013767 GO:0006355(InterPro)
Cam08g1359 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1022 1133 IPR003594 -
Cam08g1359 1137 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
Cam08g1359 1137 SMART HKATPase_4 1022 1135 IPR003594 -
Cam08g1359 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 639 746 IPR035965 -
Cam08g1359 1137 SUPERFAMILY GAF domain-like 206 413 - -
Cam08g1359 1137 FunFam Phytochrome 629 760 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1359 K12120 - - csv:101219585 1969.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1356 Cam-Chr8:19840100 Cam08g1359 Cam-Chr8:19880663 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0064 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1442.2
Cam11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cam01g0683 . 24 971 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1298.5
Cam02g0287 . 279 1231 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Cam06g0005 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 4.3e-268 921.4
Cam02g0887 . 304 1248 Histidine Kinase Gene Family AT2G01830 51.7 8.5e-264 907.1
Cam05g1764 . 1 997 Histidine Kinase Gene Family AT5G10720 57.2 3.2e-291 998.0
Cam08g1356 . 150 1269 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Cam08g1359 . 6 1137 Histidine Kinase Gene Family AT1G09570 70.0 0.0e+00 1577.0
Cam02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1202.2
Cam05g0774 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.9
Cam05g0774 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Cam03g0721 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1240.7
Cam08g1356 . 170 1203 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1089.3
Cam02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.1
Cam02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1361.3
Cam05g0774 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1152.5
Cam08g1356 . 158 1263 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1116.3
Cam05g0774 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.3
Cam03g0721 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.8 0.0e+00 1280.4
Cam08g1356 . 157 1264 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.3
Cam02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1115.5
Cam03g0721 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1370.9
Cam05g0774 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1271.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56