Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1359 ATGTCATCAACAGGTAGACCAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCGCCGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCACGACGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCTGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTATGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCGTGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCAGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGATTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTTGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTGCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCACTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGCTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3414 42.36 MSSTGRPSQSSRNTGRGSSSSSQSRHISRILTQTSIDAKLQSHFEQSGPSFDYSTSIHLTTNPTAAPPPAAAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPFYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASMVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHRDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGFSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIELGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLHKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSCCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGCYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGVEQKQLLHNSVNCQRQISKLLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAACS 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19880663 19887498 + CaPI482276_08g013590.1 Cam08g1359 133410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1359 1137 Gene3D - 207 576 IPR029016 -
Cam08g1359 1137 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Cam08g1359 1137 Pfam Phytochrome region 429 602 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Cam08g1359 1137 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cam08g1359 1137 SMART pas_2 635 701 IPR000014 -
Cam08g1359 1137 SMART pas_2 762 832 IPR000014 -
Cam08g1359 1137 NCBIfam PAS domain S-box protein 640 756 IPR000014 -
Cam08g1359 1137 SUPERFAMILY GAF domain-like 424 600 - -
Cam08g1359 1137 CDD PAS 774 887 IPR000014 -
Cam08g1359 1137 ProSiteProfiles PAS repeat profile. 633 703 IPR000014 -
Cam08g1359 1137 Pfam His Kinase A (phospho-acceptor) domain 912 973 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam08g1359 1137 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Cam08g1359 1137 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1131 IPR036890 -
Cam08g1359 1137 PANTHER OS08G0260000 PROTEIN 8 1010 - -
Cam08g1359 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Cam08g1359 1137 FunFam Phytochrome 421 549 - -
Cam08g1359 1137 ProSiteProfiles Histidine kinase domain profile. 916 1135 IPR005467 -
Cam08g1359 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 885 IPR035965 -
Cam08g1359 1137 Gene3D PAS domain 81 329 - -
Cam08g1359 1137 SMART HisKA_10 909 974 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam08g1359 1137 CDD PAS 644 750 IPR000014 -
Cam08g1359 1137 MobiDBLite consensus disorder prediction 1 26 - -
Cam08g1359 1137 PIRSF Phytochrome_conventional 7 1137 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cam08g1359 1137 Gene3D PAS domain 628 766 - -
Cam08g1359 1137 PRINTS Phytochrome signature 636 652 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 748 768 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 563 581 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 530 549 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 728 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 PRINTS Phytochrome signature 655 670 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cam08g1359 1137 Gene3D - 421 593 IPR043150 -
Cam08g1359 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Cam08g1359 1137 Coils Coil 413 433 - -
Cam08g1359 1137 Gene3D - 953 1129 IPR036890 -
Cam08g1359 1137 Pfam PAS fold 766 887 IPR013767 GO:0006355(InterPro)
Cam08g1359 1137 Pfam PAS fold 636 750 IPR013767 GO:0006355(InterPro)
Cam08g1359 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1022 1133 IPR003594 -
Cam08g1359 1137 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
Cam08g1359 1137 SMART HKATPase_4 1022 1135 IPR003594 -
Cam08g1359 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 639 746 IPR035965 -
Cam08g1359 1137 SUPERFAMILY GAF domain-like 206 413 - -
Cam08g1359 1137 FunFam Phytochrome 629 760 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1356 Cam-Chr8:19840100 Cam08g1359 Cam-Chr8:19880663 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1359 K12120 - csv:101219585 1969.9