Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1372 ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACACTTCAGCGTCGGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAACGCCGGAATTGAAGGGTCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGCAGTGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCCATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGCACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCAGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTCTCACCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACATTGAGCGAATCTTCCGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAATTTTTTCATATTGCTGGACTTGGTGGAATCAACAAATCCGTATTTTCCTGTTTCGTTTCACTGCTTCGGTGTTTTGTAAAGGGGAAAGGAAAAAGGATTAGGAATTGGGAAATAGTCATGGCTGTTCTTCCATTGGGAATACGCAGCAGGTGA 1230 48.62 MSGSETGVITSREHFSVGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFIADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWKFFHIAGLGGINKSVFSCFVSLLRCFVKGKGKRIRNWEIVMAVLPLGIRSR 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20042464 20051368 + CaPI482276_08g013720.1 Cam08g1372 133423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1372 409 Gene3D - 172 307 - -
Cam08g1372 409 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 335 IPR039605 GO:0003680(InterPro)
Cam08g1372 409 MobiDBLite consensus disorder prediction 72 159 - -
Cam08g1372 409 MobiDBLite consensus disorder prediction 122 142 - -
Cam08g1372 409 MobiDBLite consensus disorder prediction 320 349 - -
Cam08g1372 409 MobiDBLite consensus disorder prediction 315 349 - -
Cam08g1372 409 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Cam08g1372 409 CDD DUF296 171 285 IPR005175 -
Cam08g1372 409 FunFam AT-hook motif nuclear-localized protein 1-like 172 302 - -
Cam08g1372 409 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
Cam08g1372 409 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0279 Cam-Chr1:3120353 Cam08g1372 Cam-Chr8:20042464 2.20E-52 dispersed
Cam02g1753 Cam-Chr2:30632156 Cam08g1372 Cam-Chr8:20042464 9.00E-40 dispersed
Cam06g0384 Cam-Chr6:5941454 Cam08g1372 Cam-Chr8:20042464 4.50E-62 dispersed
Cam08g1372 Cam-Chr8:20042464 Cam10g0168 Cam-Chr10:3286195 2.70E-61 dispersed
Cam11g1917 Cam-Chr11:31605971 Cam08g1372 Cam-Chr8:20042464 5.60E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1372 - - - 0.0