Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1383 ATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGGTTTTCTTTTGTCCGTTTGGGTTTCTCTGCTACTGTATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCAGCCATTGAAATGTGGTTCAACGAATGCAGGGAAAGTAGAAGGAGGCCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCAAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCTCTCCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTTTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCTTTTGAGGCGAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACTGTTGGTTCGAATGTACTTCCCATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAGATACTGTCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCCATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAAGTATTTCAAGCATTGTTAATGCCATTAGAAGCTCTGGTGCAATTATCAGCTTGGTTCAGTTTATTGAAGCCCCACAGGTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAATGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGGGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCGAATTCTTGCGAGGATTACATTTATATTGCCTGCTGAGCCTGATGCTCTTGCATTTTGTCGCATGCATAATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATCTCCAGATGGTTTCAGCCATGGCATTGGAAAACTTATCTCTAGAGTCCAAAAATTTGACTCAGTTGCCTACGCTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACGTGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAAGGCAAGGCAGTGGACAAATTGGTAGCCCTTTTAGATCACACAAGTGAGAAGGTCGTTGAGGCAGCACTTGCGGCACTATCTACTTTATTGGACGATGGGGTCGATGTTGAGAAGGGGGTGGACATTTTGCACAATGTAGGAGGGGTTCAGCCTATATTTGATGTGTTGCTTGAAAACCGTACAGAGAATCTAATGAGAAGGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGACAACATCGCAATGGAATTCTCGAATAATCCAAAGGTAAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACAACAAAACCAGGCAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTCCCTAATCCTAGTAATATGGGATAA 2556 44.13 MCLVLPSPATRDHDWVVAIAGFLLSVWVSLLLYRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGSPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNVLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQTTLVSEDTVHNLLQLISNTGPAIECKLLQVLVGLTSSPSSISSIVNAIRSSGAIISLVQFIEAPQVDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDLGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITFILPAEPDALAFCRMHNLAALFIELLQSNGLDNLQMVSAMALENLSLESKNLTQLPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEGKAVDKLVALLDHTSEKVVEAALAALSTLLDDGVDVEKGVDILHNVGGVQPIFDVLLENRTENLMRRAVWTVERLLRTDNIAMEFSNNPKVSTALVDAFQHGDNKTRQIAERALRHVDKLPNFSNIFPNPSNMG 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20113040 20122670 - CaPI482276_08g013830.1 Cam08g1383 133434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1383 851 Coils Coil 287 307 - -
Cam08g1383 851 SUPERFAMILY RING/U-box 52 145 - -
Cam08g1383 851 SMART Ubox_2 67 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam08g1383 851 CDD RING-Ubox_PUB 65 122 IPR045210 -
Cam08g1383 851 Gene3D - 345 522 IPR011989 -
Cam08g1383 851 SMART arm_5 215 255 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 752 794 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 381 426 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 173 213 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 482 522 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 300 340 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 341 380 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 SMART arm_5 707 748 IPR000225 GO:0005515(InterPro)
Cam08g1383 851 Gene3D - 612 842 IPR011989 -
Cam08g1383 851 Gene3D - 136 321 IPR011989 -
Cam08g1383 851 ProSiteProfiles U-box domain profile. 63 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam08g1383 851 Pfam U-box domain 66 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam08g1383 851 SUPERFAMILY ARM repeat 439 836 IPR016024 -
Cam08g1383 851 SUPERFAMILY ARM repeat 166 479 IPR016024 -
Cam08g1383 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 135 IPR013083 -
Cam08g1383 851 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 51 844 IPR052608 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1383 Cam-Chr8:20113040 Cam11g1412 Cam-Chr11:26804562 1.20E-15 dispersed
Cam08g1383 Cam-Chr8:20113040 Cam05g2539 Cam-Chr5:33222124 2.40E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1383 - - - 0.0