Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1389 ATGAAGGACGACGCTGACTTTTATAAAACGGTTTCCTCCGCCTCCCGAAATGGAAACTCCCTAGTGGCATGTCTCGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAACAGGGAAAGTTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCAATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTTGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTCGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTCATGTACAAGAACTACGCAATGGTAGGATTCACAATTCATCACAATCATCACCCTCACAACAGAATGACACCCATGCCCAGGAATCAGATCCCTGA 1188 44.95 MKDDADFYKTVSSASRNGNSLVACLDGSRVESDSRVRFESRHSVNSSGTWRGKEGESNRESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLASQSHVQELRNGRIHNSSQSSPSQQNDTHAQESDP 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20176700 20180868 + CaPI482276_08g013890.1 Cam08g1389 133440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1389 395 SUPERFAMILY Protein kinase-like (PK-like) 65 358 IPR011009 -
Cam08g1389 395 SMART serkin_6 84 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1389 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g1389 395 ProSiteProfiles Protein kinase domain profile. 84 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1389 395 Gene3D Transferase(Phosphotransferase) domain 1 160 382 - -
Cam08g1389 395 PANTHER OS07G0668900 PROTEIN 48 385 - -
Cam08g1389 395 Pfam Protein kinase domain 85 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1389 395 Gene3D Phosphorylase Kinase; domain 1 55 159 - -
Cam08g1389 395 FunFam probable serine/threonine-protein kinase RLCKVII 55 159 - -
Cam08g1389 395 CDD STKc_IRAK 90 358 - -
Cam08g1389 395 MobiDBLite consensus disorder prediction 373 395 - -
Cam08g1389 395 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524(InterPro)
Cam08g1389 395 FunFam Serine/threonine-protein kinase PBS1 160 375 - -
Cam08g1389 395 MobiDBLite consensus disorder prediction 45 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1389 Cam-Chr8:20176700 Cam10g2032 Cam-Chr10:34163794 1.60E-127 dispersed
Cam09g0143 Cam-Chr9:2246534 Cam08g1389 Cam-Chr8:20176700 1.40E-68 dispersed
Cam08g1389 Cam-Chr8:20176700 Cam08g1391 Cam-Chr8:20197703 4.50E-77 proximal
Cam11g1891 Cam-Chr11:31474564 Cam08g1389 Cam-Chr8:20176700 3.10E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85375 PF00069 Pkinase 4.00E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1389 - - - 0.0