Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1428 ATGCATGAGCCTGAGGAGGAAAATCGGGATGGTGCTCGCAAGAGAAGATTCAGTGAGCTGGAGCCCGGTGTTGCTTCTGATCAGTCCAATTTCAACCAACCCATGGACGAGGGCTTCATTCCTAGAAGGTACCAAATGGAGGTTTTTGAAGTTGGTATGAGGAGAAACACCGTAGCCGTGTTGGAAACAGGTTCTGGAAAGACCATGATCGCAGTGATGCTTATGAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCAACTGTTCATTTGGTTCATCAGCAATTTAACGTTATTAAAGTTCATACTGATTTTGAAGTGGCGGAATATTATGGTGCCATGGGGGTCGATGATTGGAATATGAACCGCTGGGACAAGGAAACAAGCGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTAAGGAAGGCATATTTTAGACTGGGAAGCGTATGCTTGATGATCATTGATGAATGCCATCGTGCTACTGGTAATCACCCTTATACGAAAATCATGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTGTTTCCTCTTCCTCTGATTGTGAATGCCAAATAGCAGACCTTGAAAGTATCTTGGATTGTCAGATTTATTCTATTGAAGATAAGAAAGAAGTGGAAATATATGTTCCCTCTGCAAAGGAAATTTGCTTATTTTATGAACCTGCTAAGCCTCAAACGTTGGAGTTGAAGGCAAAGATAGAAGCTCTGTGGTCCAAGTTTGATGCTTTATTGTCAAACTCACAAGGGGCAATGCAAGGTCATTATAAAGATGTAGACAGTAAGCTTAAGGCACTGAAGAAACGACTGTCCAGTGATCATTTAAAGATTGCTTATTGCCTTGACGAACTTGGTGTTATGTGTGCTTATGAGGCGATTAAAGTTCTATTAGAGAATGTCAAAGTTCCGAACGAGGAATCTGAGGTTTATAAGGAAAGTTTTTTGCAATATAAACATTTTCTTGAGGAAGCATTACTTGTAATTGGGGAATCATTTCCACTTGGAAATGAGAATATACCAAAATGTGGTTTTGACTTTTGGAAAGCTGTAGACTTGGGCTACATTTCTCCTAAATTGTTTGAACTTCTCCAACTCTTTGAATCATTTGGGGTATCTAGGCAGGTGCTCTGTCTCATATTTGTTGAAAGAATAGTTGCCGCTAATGTTATCGAAAGAATTGTGAAAAAAGTAGCAAATTTATCTCATTTTACGGTTTCATATGTGACGGGATGTAATACATCAGTTGGTGCACTGGCACCGAAAGTCCAGAAGGAGACATTGGAGTTGTTTTGTCATGGCAAGCTCAATCTATTATTTTCCACTGATGTAGTTGAGGAGGGACTTCATGTACCAAATTGCTCATTTGTGGTACGGTTTGACCTTCCTAAGACGGTTCGTAGTTATGTACAATCTCGAGGTCGTGCTCGACAGAACAACTCCCAATATATTTTGTTGCTGGAGAGGGGAAACCTGAAGCAAAGAGCTCAGCTATTTGATGTCATAAGGAGTGACCGATCAATGACAGATGCAGCTACGAGTAGAGACCCTGATGCATGCATTTTGAAACCTTTTTCAATTGTGGAGACAGATTGTTACACTGTGGAGGCAACTGGGGCTTCGGTTACTGCAGATTCTAGTGTTGGTCTCATATACCAATACTGTAAAAAGCTCCCTGGTGATAAATATTTCAGTCCAAAACCAATCTTTCAACTCTCATATGGTGAAGGATCCTACGAGTGTCAGCTAACTTTACCTCCTACAGCAGCTTTTCAAACCATAGTTGGTCCTTCAACTAGGAATTCTAATCTGTCTAAGCAGCTTGTATGCCTGGAGGCATGTAAGAAGCTACATAAAATGGGTTCACTTAATGACCATCTTCTCCCTTCTGTTGAAGAGAGATCAGAATTTGACATGGGTCTGAAAAGCAATGCATCCACTTCTAGAGCAGGATCAACAAAAAGAAAGGAACTGCATGGCAGAACTGCGATTAGAGCTTTAGCTGGAACTTGGGGAGAACAAGTTGAAGGGGCCACTTTTCAGGCATATAAATTTGACTTCTCCTGTAGTGTTATGTATGAGGTTTATTCTGGATTTGTTCTTCTGATAGAATCAAAACTTGATGATGACGTGGGCAATTTTGAACTTGAACTTTATCTACTCTCAAAAACGGTTAAGGCTTCTGTGTCTTTTGGCGGGGAGGTTCATTTGGATGCTGAACAGATAGCAAAAGCAAAGTGCTTTCAGGAGCTTTTCTTCAACGGATTGTTTGGGAGACTGTTCATTGGGTCAAAATCAACTGGAAAAAAGAGGGATTTTTTACTTCAGAAAGATACACAACCTCTTTGGATTTCATCAAACATGTATCTGCTTCTACCAGTGGATTTGCCGGATGATTCAACTCATGATTTATGGAAAATACATTGGAGAGCAATTGATTCCTGTGTGTCTGTGGTTGAGTTTTTGAAGAAAAATTCATCTTTGGATGCTGAAAGAAATTGTGGTGCTGATGCCATATCAGATTCATCACCTTCTAGAAATAACTCTGCTGAAACTGGAAGCAATGCTGCAAGTTTAATTCACTTTGCAAATCGTGTTCTAGATGTTCATTCCTTGAAGGACAGGGTGGTATTGGCTATTCATACTGGAAGAATCTACTCAATCGTTGAAGTTGTCAGTAATACATCTGCTGAGAGCCCTTTTGATGGGAATAGTGACAAAGCACCACCTGATTACATTACCTTTGGGGACTATTTCAAAAAAAGGTACGGAATTTCGCTAATTTTTCCAAAACAGCCTCTGTTGCGTTTAAAGCAAAGTCATAATCCTCACAATCTACTTGTCAACTTTAAGGATGAAGGCAATACCAGCGATAAGTCGCTATCTGGTCCTGCATTCAGAAAGCCACAAATGCATGTCCATATGCCTCCTGAACTTCTGCTTAGCATGGATGTCCCAAAGGGGGTTTTGAAGTCTTCATACTTGCTGCCATCTTTGATGCACCGTTTTGAATCTTTGATGTTAGCCAGCCAGCTTAGGAAGGAGATTAATTATCACTCGAACAGCCTCTGTATATCAAGCTCTTTGATTTTGGAAGCACTTACAACCCTTGGAAGTTGTGAGAGTTTTTCCTTAGAGCGGTTAGAATTGCTTGGTGATTCAGTGCTGAAGTATGCTGTGAGCTGCCACCTCTTTCTCAAGTTCCCTGAAAAACATGAAGGGCAGTTATCTTCTAGGCGGCAACAGGTTATCTGTAATGCAACCTTACATGCATTGGGAACAAAGTGCAGGTTACAGGGATACATACGTGATTCTGCATTTGACCCACGTCGGTGGGTGGCACCAGGACAAGGTACTAATCGTCCTGTTCCTTGTAAATGTGGAGTGGATACAGTAGAAGTTCCTTTGGATGAAAAGTTCTGCACTGAAGATCCAAAAGTTGTTTTGGGTAAGTGCTGTGATAAGGGACACAGGTGGGTGGTTTCAAAAACTATAGCCGACTGTGCTGAAGCCCTTATAGGGGCCTATTATGTTGATGGTGGAATCATTGCTGCACTCCATGTGATGAAGTGGCTTGGAATTGATGCTGATCTGGACGTAGCATTAGCTGTTGATGCAATTACTTCTGCATCTCTGAGATCCTGCCCTTTGGAAGATACTGAGATTGCAACCATCGAGTCAAAAATTGGATATGATTTTGCTGTCAAAGGATTATTGGTGGAGGCTATAACACACACATCTGATCAAGAACTTGGTGTTAATTACTGTTACCAGAGGCTTGAGTTTCTTGGTGACTCAGTGTTAGACTTGCTCATTACTTGGCATTATTATCAGAAGCACTCAGATATTGACCCAGGGGAGTTGACTGATTTACGTTCAGCTTCTGTTAATAATGAAAATTTTGCTCAAGTGGCTGTGAGACGGAATCTTCAGCAACATCTTCAACATTGTTCTGGGCTTTTGATGAGTCAAATTGCTGAATATGTGAAGTTGTTGTCTGAGTCTCATGATACTGGGAAGTCACTGCATGGGAACAAAGGCCCCAAGGTTCTTGGTGATATGGTGGAAAGTATTGCAGGTGCCATACTGGTTGACACAAAGCTTAATCTTGACGAAGTGTGGAAAATATATAAGCCACTATTGACTCCATTTGTGACCCCTGATAAACTTGAACTTCCACCACTCCGAGAACTAATTGAATTATGTGATTCTCTTGGGTATTTCATCAAAGATAAATGTACTAGGAAGGGAGAAATTTTTCATGCAGAACTTAGATTACAGTTGCAAGATGCCCTATTGATAGGTGAAGGATATGAACGAACCAGAAAAGCCGCAAGAGGGGAAGCTGCTCATCGCTTATTAGTTCAACTTGAGACAAGAGGAATTTCTTATTCTCGTTCTGGCTCTAAGAAGAGAAAACAAAATCCCAGTCACATTGAGGCTGCTATCGATCTCCCATCATCTGTCAACTGTTCTGCAGAAGCCTGTGATCCCAACTTGGAGACCCCTGTTATTGGACCAGTCAGCTTAAAGAAAGGAGGACCACGGAGTACTCTGTTTGAACTATGCAAGAAACTGCAGTGGCCAATGCCAACTTTCAATACAGCTGAAAATAAATCAAGGGTCCAAATCGAGATTGGCGAAGGCTCAGAGAAAAGAAAAGGATTCAACAGTTTTTTGTCAAATATTATTTTGCAAATACCCAATGCTGGCTGTATTGAATGTGAAGGTGAAGCTCGAGCCGACAAGAAGAGCTCACTCGACTCGGCATCTCTTGTCATGCTTCAGGAACTCCGACAACGAGGAAGAGTCATTATTAACGACTCATGA 4932 41.12 MHEPEEENRDGARKRRFSELEPGVASDQSNFNQPMDEGFIPRRYQMEVFEVGMRRNTVAVLETGSGKTMIAVMLMKEIGKAMKSSGDKKFIIFLAPTVHLVHQQFNVIKVHTDFEVAEYYGAMGVDDWNMNRWDKETSERDVLVMTPQILLDALRKAYFRLGSVCLMIIDECHRATGNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKGVSSSSDCECQIADLESILDCQIYSIEDKKEVEIYVPSAKEICLFYEPAKPQTLELKAKIEALWSKFDALLSNSQGAMQGHYKDVDSKLKALKKRLSSDHLKIAYCLDELGVMCAYEAIKVLLENVKVPNEESEVYKESFLQYKHFLEEALLVIGESFPLGNENIPKCGFDFWKAVDLGYISPKLFELLQLFESFGVSRQVLCLIFVERIVAANVIERIVKKVANLSHFTVSYVTGCNTSVGALAPKVQKETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLERGNLKQRAQLFDVIRSDRSMTDAATSRDPDACILKPFSIVETDCYTVEATGASVTADSSVGLIYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAAFQTIVGPSTRNSNLSKQLVCLEACKKLHKMGSLNDHLLPSVEERSEFDMGLKSNASTSRAGSTKRKELHGRTAIRALAGTWGEQVEGATFQAYKFDFSCSVMYEVYSGFVLLIESKLDDDVGNFELELYLLSKTVKASVSFGGEVHLDAEQIAKAKCFQELFFNGLFGRLFIGSKSTGKKRDFLLQKDTQPLWISSNMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNCGADAISDSSPSRNNSAETGSNAASLIHFANRVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGNSDKAPPDYITFGDYFKKRYGISLIFPKQPLLRLKQSHNPHNLLVNFKDEGNTSDKSLSGPAFRKPQMHVHMPPELLLSMDVPKGVLKSSYLLPSLMHRFESLMLASQLRKEINYHSNSLCISSSLILEALTTLGSCESFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCRLQGYIRDSAFDPRRWVAPGQGTNRPVPCKCGVDTVEVPLDEKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDADLDVALAVDAITSASLRSCPLEDTEIATIESKIGYDFAVKGLLVEAITHTSDQELGVNYCYQRLEFLGDSVLDLLITWHYYQKHSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQIAEYVKLLSESHDTGKSLHGNKGPKVLGDMVESIAGAILVDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELCDSLGYFIKDKCTRKGEIFHAELRLQLQDALLIGEGYERTRKAARGEAAHRLLVQLETRGISYSRSGSKKRKQNPSHIEAAIDLPSSVNCSAEACDPNLETPVIGPVSLKKGGPRSTLFELCKKLQWPMPTFNTAENKSRVQIEIGEGSEKRKGFNSFLSNIILQIPNAGCIECEGEARADKKSSLDSASLVMLQELRQRGRVIINDS 1643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20564707 20585738 - CaPI482276_08g014280.1 Cam08g1428 133479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1428 1643 SMART riboneu5 1062 1235 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 SMART riboneu5 1271 1424 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 Pfam Dicer dimerisation domain 581 667 IPR005034 GO:0016891(InterPro)
Cam08g1428 1643 CDD RIBOc 1062 1226 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 SUPERFAMILY RNase III domain-like 1034 1234 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 FunFam Dicer-like 104 894 1015 - -
Cam08g1428 1643 CDD RIBOc 1272 1422 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 ProSitePatterns Ribonuclease III family signature. 1292 1300 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 Pfam PAZ domain 905 1032 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam08g1428 1643 SUPERFAMILY PAZ domain 899 1014 IPR036085 GO:0005515(InterPro)
Cam08g1428 1643 Gene3D Ribonuclease III domain 1252 1421 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 Gene3D Ribonuclease III domain 1038 1226 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 FunFam Endoribonuclease dicer-like 1 384 547 - -
Cam08g1428 1643 Gene3D - 387 545 IPR027417 -
Cam08g1428 1643 SMART PAZ_2_a_3 850 1042 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam08g1428 1643 SMART helicmild6 426 513 IPR001650 -
Cam08g1428 1643 PANTHER DICER-RELATED 55 1574 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Cam08g1428 1643 Gene3D paz domain 894 1015 - -
Cam08g1428 1643 SMART ultradead3 37 244 IPR014001 -
Cam08g1428 1643 ProSiteProfiles Ribonuclease III family domain profile. 1256 1401 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 FunFam Endoribonuclease dicer-like 1 576 672 - -
Cam08g1428 1643 Pfam DEAD/DEAH box helicase 43 205 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam08g1428 1643 SUPERFAMILY RNase III domain-like 1255 1421 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 CDD DEXHc_dicer 39 237 - -
Cam08g1428 1643 FunFam Dicer-like 104 1038 1227 - -
Cam08g1428 1643 MobiDBLite consensus disorder prediction 1 21 - -
Cam08g1428 1643 FunFam Endoribonuclease dicer-like protein 36 275 - -
Cam08g1428 1643 Pfam Ribonuclease III domain 1292 1400 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 Pfam Ribonuclease III domain 1080 1215 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 MobiDBLite consensus disorder prediction 1 36 - -
Cam08g1428 1643 ProSiteProfiles PAZ domain profile. 892 1018 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam08g1428 1643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 529 IPR027417 -
Cam08g1428 1643 ProSiteProfiles Ribonuclease III family domain profile. 1043 1215 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cam08g1428 1643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 205 IPR014001 -
Cam08g1428 1643 Gene3D - 37 273 IPR027417 -
Cam08g1428 1643 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 671 IPR005034 GO:0016891(InterPro)
Cam08g1428 1643 Gene3D Dicer dimerisation domain 576 673 IPR038248 -
Cam08g1428 1643 FunFam Endoribonuclease dicer-like 1 1251 1422 - -
Cam08g1428 1643 Pfam Helicase conserved C-terminal domain 407 510 IPR001650 -
Cam08g1428 1643 Gene3D - 1555 1634 - -
Cam08g1428 1643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 552 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1428 K11592 - - csv:101205038 3023.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0005 Cam-Chr5:540401 Cam08g1428 Cam-Chr8:20564707 1.60E-186 dispersed
Cam06g1348 Cam-Chr6:24877697 Cam08g1428 Cam-Chr8:20564707 6.60E-186 dispersed
Cam08g1428 Cam-Chr8:20564707 Cam10g0481 Cam-Chr10:7229121 1.80E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38