Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g1443 | ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAACACGTGTGGATACCTTTCTCTATTGTACGGGATGTTCGGGTCATGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCGGTTTCGTTATGCGTTGAAGTCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCAGCCGAGGCTTGAGGGGCCATCTTTTGATAAACTCAGGAGGACGATTCTTTGTTCCATGAACATAGGCAGTGGTGGCTATGGCTGTCCATGGTGGTGGTTTTTGGCAGTGGGCGGTGCTCGTCGGCGGCAGACATGGTGA | 969 | 45.3 | MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGNTCGYLSLLYGMFGSWVQQGEIWFVCAVSLCVEVKWIRVLSKARRAARISYQPRLEGPSFDKLRRTILCSMNIGSGGYGCPWWWFLAVGGARRRQTW | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20765589 | 20772297 | + | CaPI482276_08g014430.1 | Cam08g1443 | 133494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g1443 | 322 | PANTHER | CPG BINDING PROTEIN | 8 | 227 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cam08g1443 | 322 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cam08g1443 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 232 | IPR013083 | - | |
Cam08g1443 | 322 | MobiDBLite | consensus disorder prediction | 145 | 193 | - | - | |
Cam08g1443 | 322 | SUPERFAMILY | FYVE/PHD zinc finger | 171 | 226 | IPR011011 | - | |
Cam08g1443 | 322 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g1443 | Cam-Chr8:20765589 | Cam09g0081 | Cam-Chr9:1672909 | 2.70E-96 | dispersed | |
Cam08g1443 | Cam-Chr8:20765589 | Cam11g0168 | Cam-Chr11:3264846 | 1.80E-108 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g1443 | K26274 | - | csv:101208889 | 404.445 |