Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1443 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAACACGTGTGGATACCTTTCTCTATTGTACGGGATGTTCGGGTCATGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCGGTTTCGTTATGCGTTGAAGTCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCAGCCGAGGCTTGAGGGGCCATCTTTTGATAAACTCAGGAGGACGATTCTTTGTTCCATGAACATAGGCAGTGGTGGCTATGGCTGTCCATGGTGGTGGTTTTTGGCAGTGGGCGGTGCTCGTCGGCGGCAGACATGGTGA 969 45.3 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGNTCGYLSLLYGMFGSWVQQGEIWFVCAVSLCVEVKWIRVLSKARRAARISYQPRLEGPSFDKLRRTILCSMNIGSGGYGCPWWWFLAVGGARRRQTW 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20765589 20772297 + CaPI482276_08g014430.1 Cam08g1443 133494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1443 322 PANTHER CPG BINDING PROTEIN 8 227 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cam08g1443 322 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cam08g1443 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 232 IPR013083 -
Cam08g1443 322 MobiDBLite consensus disorder prediction 145 193 - -
Cam08g1443 322 SUPERFAMILY FYVE/PHD zinc finger 171 226 IPR011011 -
Cam08g1443 322 MobiDBLite consensus disorder prediction 145 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1443 Cam-Chr8:20765589 Cam09g0081 Cam-Chr9:1672909 2.70E-96 dispersed
Cam08g1443 Cam-Chr8:20765589 Cam11g0168 Cam-Chr11:3264846 1.80E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1443 K26274 - csv:101208889 404.445