Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1445 ATGGCAGAGAGTATTAGAAAGAGGCTTGATGAAGCCGCCATTGAAGGAAACGTAGCAACGTTGTTAGAATTACTCCAACAAGATCCAATGTTACTGGCCAGACTCAACCTTAACGACTTCAACGAGACTCCACTGCACGTGGCTTCTCTTCTTGGTCACGTGACATTTGTGGATGAGATTCTCAAGCGAAGGCCTCAGCTGGCCAGAGACTTGGATTCTCGCCGTTGTTCCGCCCTCCACTTGGCCGCCGCCGAGGGCTCTTTAGACATTGTGCAAATTCTGCTGCGAGTTGATCCTGATATGTGTTCTATCTGCAATGAAGACGGCCGGAATCCTATTCATCTCGCCGCCATGAGAGGCCGGGTTGATGTCTTGGCCGAGCTCGTTCTAGTCAGACCGGCAGCCGCTCGAACTGCCGTGGACGGCGGGGGAACGGTGTTGCATTTATGTGTGAAGTTCAACCAGGTGGAGGCTTTGAAGATGTTGATTGAAACTATGGAAGTGAAAGAGAAAGACAATGATTTTATTAATACTCAGGATGATTATGGCTTCACTATCCTTCATTTAGCAGTCTCACACAAACAACTTCAGACCGTAGAATATCTAATCAACCATACTGGAATCGAAGTAAATGCAAAAACCTCAAATGGGTTAACACCTCTAGACATTCTAACTCAAAGCCAAAGAGATTTAAAGGACTTGGACATTGCAGAGACTCTCACAGCCGCCAATGCCATCCGCACCACAAACAAAAAAGCGCCGCCGCCGCCGCCGCCGCCGCCGTCTTCTTGTATCAAGATCAAAAACGAAAAGAGTTGTCAAACATGGAGATGGTTTTTTTCGGCCTTATTCCACAATGGGGATTGGTGGTTTATGAACGAAAAAAGCGAGTGGCTAATGAAGCAAGAGGCATTAATGGTTGTAGCATCCTTAATTGCAACAATGGCTTTTCAAGCCGGAGTGAACCCTCCCGGCGGCATTTGGCAAGACGACAAAGCCTCGGGAAATCCAAGACAGACTGCTGGAACGTCGGTGATGGCCGGAAAAGACAAAGAAACATACAATAAATATCTTGTGTCTAACACAGTAGGGTTCATGACTTCGTTCATAGCAATTGTGATGATTCTGATTGGGTTGCCTCAAAAACGTATTTTCATGAGGGTTTTGATCATGACAATGTGTGCTGCTGTGAGTGCCATGGCTTTCACTTATGGATATTCCATAAAGTTTTTCACTCCACTACCACCACAACCAACTGGAGCCTCCAACTCCACTTCTCCGCCTCCATCTCCACCTCCATCTCCACTTACCATCTGGCCGCGCCCCAAGTCGGACTCAGTCATCTCTTTGATTTCCATTATTGTGGCCATAGTGGTCACTTCTTCCATGGGGATTTTCTTGGTCGCCAAGCTCTTCTACGTTCATTCTCGACAGAATAAACCTACTGGACACCCGCTTCCTCGCCCATGA 1470 47.28 MAESIRKRLDEAAIEGNVATLLELLQQDPMLLARLNLNDFNETPLHVASLLGHVTFVDEILKRRPQLARDLDSRRCSALHLAAAEGSLDIVQILLRVDPDMCSICNEDGRNPIHLAAMRGRVDVLAELVLVRPAAARTAVDGGGTVLHLCVKFNQVEALKMLIETMEVKEKDNDFINTQDDYGFTILHLAVSHKQLQTVEYLINHTGIEVNAKTSNGLTPLDILTQSQRDLKDLDIAETLTAANAIRTTNKKAPPPPPPPPSSCIKIKNEKSCQTWRWFFSALFHNGDWWFMNEKSEWLMKQEALMVVASLIATMAFQAGVNPPGGIWQDDKASGNPRQTAGTSVMAGKDKETYNKYLVSNTVGFMTSFIAIVMILIGLPQKRIFMRVLIMTMCAAVSAMAFTYGYSIKFFTPLPPQPTGASNSTSPPPSPPPSPLTIWPRPKSDSVISLISIIVAIVVTSSMGIFLVAKLFYVHSRQNKPTGHPLPRP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20781278 20784018 - CaPI482276_08g014450.1 Cam08g1445 133496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1445 489 ProSiteProfiles Ankyrin repeat profile. 108 130 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SMART ANK_2a 108 137 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SMART ANK_2a 142 171 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SMART ANK_2a 182 212 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SMART ANK_2a 216 251 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SMART ANK_2a 74 103 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 Pfam Ankyrin repeats (3 copies) 104 171 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 Pfam Ankyrin repeats (3 copies) 11 96 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 SUPERFAMILY Ankyrin repeat 10 227 IPR036770 -
Cam08g1445 489 MobiDBLite consensus disorder prediction 417 436 - -
Cam08g1445 489 MobiDBLite consensus disorder prediction 420 436 - -
Cam08g1445 489 Pfam Domain of unknown function 301 407 IPR026961 -
Cam08g1445 489 Gene3D - 3 254 IPR036770 -
Cam08g1445 489 ProSiteProfiles Ankyrin repeat region circular profile. 108 129 - -
Cam08g1445 489 ProSiteProfiles Ankyrin repeat region circular profile. 74 101 - -
Cam08g1445 489 PANTHER HOMEOBOX PROTEIN WARIAI 5 455 - -
Cam08g1445 489 ProSiteProfiles Ankyrin repeat profile. 74 101 IPR002110 GO:0005515(InterPro)
Cam08g1445 489 Pfam Ankyrin repeats (many copies) 177 223 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1445 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1169 Cam-Chr7:26039365 Cam08g1445 Cam-Chr8:20781278 6.80E-10 dispersed
Cam08g1445 Cam-Chr8:20781278 Cam08g1447 Cam-Chr8:20792798 1.50E-13 dispersed
Cam08g1444 Cam-Chr8:20774469 Cam08g1445 Cam-Chr8:20781278 1.70E-13 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58