Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1480 ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCTCCAATCTCAACGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACAGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACTCACCACCCACAACTAACATTAACCCTCCCCCCACTCCCAATGACCAGCCACACGATTTGGTTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCGTCCCACCCGCCATGATGCGTAGAACATAA 879 48.69 MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFLQSQRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKQPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHSPPTTNINPPPTPNDQPHDLVPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIVPPAMMRRT 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21065548 21070348 - CaPI482276_08g014800.1 Cam08g1480 133531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1480 292 MobiDBLite consensus disorder prediction 1 26 - -
Cam08g1480 292 MobiDBLite consensus disorder prediction 221 279 - -
Cam08g1480 292 SMART WRKY_cls 136 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1480 292 SUPERFAMILY WRKY DNA-binding domain 128 194 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1480 292 Gene3D WRKY domain 123 189 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1480 292 MobiDBLite consensus disorder prediction 84 102 - -
Cam08g1480 292 MobiDBLite consensus disorder prediction 49 63 - -
Cam08g1480 292 FunFam WRKY transcription factor 57 122 196 - -
Cam08g1480 292 MobiDBLite consensus disorder prediction 49 120 - -
Cam08g1480 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 228 IPR044810 GO:0003700(InterPro)
Cam08g1480 292 ProSiteProfiles WRKY domain profile. 131 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1480 292 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1480 292 MobiDBLite consensus disorder prediction 248 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0105 Cam-Chr2:2195613 Cam08g1480 Cam-Chr8:21065548 1.20E-27 dispersed
Cam04g0918 Cam-Chr4:23312070 Cam08g1480 Cam-Chr8:21065548 7.20E-21 dispersed
Cam08g1451 Cam-Chr8:20804851 Cam08g1480 Cam-Chr8:21065548 4.20E-23 dispersed
Cam08g1480 Cam-Chr8:21065548 Cam09g2282 Cam-Chr9:37291313 4.40E-37 dispersed
Cam08g1480 Cam-Chr8:21065548 Cam06g0441 Cam-Chr6:6524678 5.50E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52427 PF03106 WRKY 8.80E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1480 - - - 0.0