Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1494 ATGGATGTCTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCGGAGGTTTTGGAACTTGAGAAGGCTACAATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAACTATGCAAGCGTCTCAAAGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAACGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1143 41.38 MDVSRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMETEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21177464 21181093 - CaPI482276_08g014940.1 Cam08g1494 133545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1494 380 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 377 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cam08g1494 380 Coils Coil 169 189 - -
Cam08g1494 380 Gene3D Magnesium transport protein CorA, transmembrane region 91 311 - -
Cam08g1494 380 Gene3D - 4 88 - -
Cam08g1494 380 Pfam Magnesium transporter MRS2-like 20 206 - -
Cam08g1494 380 CDD Mrs2_Mfm1p-like 17 377 IPR039204 -
Cam08g1494 380 FunFam Magnesium transporter MRS2-1 5 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1494 K16075 - - csv:101220835 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1494 Cam-Chr8:21177464 Cam10g1389 Cam-Chr10:27538192 1.20E-106 dispersed
Cam08g1494 Cam-Chr8:21177464 Cam07g0060 Cam-Chr7:1741241 1.40E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1389 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cam08g1494 . 6 380 MRS2 Gene Family AT1G16010 52.4 3.6e-107 385.6
Cam06g0667 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cam07g0060 . 715 1086 MRS2 Gene Family AT5G64560 68.9 1.4e-131 466.5
Cam02g0728 . 14 495 MRS2 Gene Family AT3G19640 64.4 2.3e-155 545.8
Cam05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.6 3.4e-142 501.9
Cam02g0026 . 59 442 MRS2 Gene Family AT3G58970 69.7 3.2e-140 495.4
Cam08g1494 . 6 380 MRS2 Gene Family AT2G03620 68.1 2.1e-136 482.6
Cam10g1389 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cam05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.1 2.3e-92 336.3
Cam06g0667 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cam07g0060 . 715 1048 MRS2 Gene Family AT5G09690 63.9 1.8e-108 389.4
Cam10g1389 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cam06g0667 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cam07g0060 . 750 1008 MRS2 Gene Family AT5G09720 61.7 4.9e-76 281.6
Cam10g1389 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cam08g1494 . 6 380 MRS2 Gene Family AT1G80900 54.2 6.8e-106 381.3
Cam01g1344 . 41 436 MRS2 Gene Family AT5G22830 71.5 3.0e-149 525.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34