Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam08g1500 | ATGTCATCACAAACCTTCAACTCTCTTCTTCTTTATTTCCCCATTTCCATTTCCCAAAGCTTCGAAGCTTTTCTTCTTACCCTTTTTCTCCTCTCCATTTTCGCCTTCTTCCTCCATCCCGGTGGCTTCGCTTGGGCCGTTTCCAAGTTCAAAACCACCGCCTCCACCGCCATCCCTGGCCCTTCCGGCCTCCCATTCATCGGGCTTCTCCATGTCTTCACTCTTTCAACTCCTCACAAAGCCCTCTCTGCCCTTGCTAATCGATTCAAAGCATACCCATTAATGGCTTTCTCTGTTGGGTTAACTAGATTTGTGATTTCTAGTAATCCTGATGTTGCTAAAGAGATTCTTAACAGCCCTGCCTTTGCTGATAGACCCGTGAAAGAGTCTGCTTATGAACTTCTTTTCAACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCAGCTACTTATATGTTTAGTCCTAAGAGAATAGCTGGGTTTGAAGGGTTTAGGAAAGAAGTTGGGGTTAAAATGGTTAGTGAAATTGAGAAATCTATGGTTTTAAAAGGGGATGTGAGGGTTAAAGAGATTCTTCATTTTGGGTCTTTGAATAATGTTATGATGACTGTTTTTGGGAAATGTTATGAGTTTTGTAATGGGGATAGTGATGGGGTTGAGCTTGAAGAGTTGGTTAAAGAAGGGTATGATTTGCTTGGGATTTTCAATTGGAGTGACCATTTTCCTTTATTGGGTTTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGGTGTTTGGCTTCTAAAGTGAATGTATTTGTGGGAAAAATCATCGAGGAACATAGAATGAAAAGGGAAATCAAGGGATATCATCAACAAGAACATAACAAAGACTTTGTTGATGTTCTGCTTGATTTGGAGAAAGATGATAAACTCTCAGATTCTGACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTTTGGAATGGATTTTAGCAAGAATGGTGATACACCAAGATATCCAAACCAAAGCCCAAAATGAAATTGATTCAGTAATAGGCAAGAAATGGAGAGCCATTTCAGATACTGATATCCAAAACCTTCCATATCTTCAAGCCATTGTGAAGGAATGTTTAAGAATGCACCCACCAGGACCACTTCTGTCATGGGCAAGGCTAGCTGTGGCGGATGTGCACGTCGATGGGAGAGTGATACCGGCGGGGACGACGGCGATGGTGAACATGTGGGCAATAACTCATAATGAAAAAGTATGGAGAGATGCAGAGAAGTTTGATCCAAATAGATTCATTGAAGAGGAAATTAGTGTAATGGGAAGTGATTTGAGATTGGCTCCATTTGGGGCAGGGAGAAGAGTTTGCCCTGGAAAAGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGAAGAAGCCATTAAAGGTGTTGACCTGTCAGAATGCCTTAAACTCTCTCTGGAAATGAAAACTCCATTGGTTTGCAGAGCTGTTCCCAGGGCTGGTTGGGGAGAGGACTGA | 1599 | 42.09 | MSSQTFNSLLLYFPISISQSFEAFLLTLFLLSIFAFFLHPGGFAWAVSKFKTTASTAIPGPSGLPFIGLLHVFTLSTPHKALSALANRFKAYPLMAFSVGLTRFVISSNPDVAKEILNSPAFADRPVKESAYELLFNRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRKEVGVKMVSEIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYEFCNGDSDGVELEELVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKGYHQQEHNKDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVIHQDIQTKAQNEIDSVIGKKWRAISDTDIQNLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHNEKVWRDAEKFDPNRFIEEEISVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSEEAIKGVDLSECLKLSLEMKTPLVCRAVPRAGWGED | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 21210568 | 21212553 | - | CaPI482276_08g015000.1 | Cam08g1500 | 133551 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam08g1500 | 532 | PANTHER | CYTOCHROME P450 78A7-RELATED | 21 | 523 | IPR051996 | - | |
| Cam08g1500 | 532 | Pfam | Cytochrome P450 | 59 | 510 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cam08g1500 | 532 | SUPERFAMILY | Cytochrome P450 | 58 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | Gene3D | Cytochrome P450 | 46 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | CDD | CYP78 | 90 | 519 | - | - | |
| Cam08g1500 | 532 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | E-class P450 group I signature | 423 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | FunFam | Cytochrome P450 78A5 | 50 | 526 | - | - | |
| Cam08g1500 | 532 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | P450 superfamily signature | 469 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam08g1500 | 532 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g0097 | Cam-Chr2:2103885 | Cam08g1500 | Cam-Chr8:21210568 | 5.80E-136 | dispersed | |
| Cam08g1500 | Cam-Chr8:21210568 | Cam03g0312 | Cam-Chr3:4356113 | 4.40E-67 | dispersed | |
| Cam06g0286 | Cam-Chr6:4884092 | Cam08g1500 | Cam-Chr8:21210568 | 1.60E-133 | transposed | |
| Cam11g1399 | Cam-Chr11:26648301 | Cam08g1500 | Cam-Chr8:21210568 | 4.60E-159 | transposed | |
| Cam04g1198 | Cam-Chr4:26066783 | Cam08g1500 | Cam-Chr8:21210568 | 5.50E-195 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam08g1500 | K20619 | - | csv:101221468 | 974.156 |