Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1503 ATGGGAAGAGGGAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGGCATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGCATTCACAGAGACGATTTCTTGGAGAAGAATTGAATGATTTGGAGACTAAGGAACTCGACCAACTAGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCAAACTATGTTTGATCAGTTGTCTGATCTCCAGAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTTCTTCTCTTCATACATCGTGGGATTCTTCACCCAACAATTTGCAATACTGCAGACAACCTCAAGACTTTCTTCAACGCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAGCAGAAGTTTCAAACCAAGAAAATGGTGTAAACTCTGGGCCAAATGGTAATGGGTTGTCTTCGCAATGGATGTTGCTTTGA 723 39.97 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELNDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSSSLHTSWDSSPNNLQYCRQPQDFLQRNNNIIALENSYNPAEVSNQENGVNSGPNGNGLSSQWMLL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21251092 21256773 + CaPI482276_08g015030.1 Cam08g1503 133554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1503 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 Pfam K-box region 86 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g1503 240 Coils Coil 117 144 - -
Cam08g1503 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 FunFam MADS-box transcription factor 1 13 88 - -
Cam08g1503 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam08g1503 240 Coils Coil 150 173 - -
Cam08g1503 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1503 240 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g1503 240 MobiDBLite consensus disorder prediction 216 240 - -
Cam08g1503 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0971 Cam-Chr7:23630625 Cam08g1503 Cam-Chr8:21251092 3.30E-09 dispersed
Cam07g1621 Cam-Chr7:30810847 Cam08g1503 Cam-Chr8:21251092 2.50E-65 dispersed
Cam08g0041 Cam-Chr8:947872 Cam08g1503 Cam-Chr8:21251092 1.50E-37 dispersed
Cam08g0049 Cam-Chr8:1032840 Cam08g1503 Cam-Chr8:21251092 1.50E-31 dispersed
Cam08g1503 Cam-Chr8:21251092 Cam08g1627 Cam-Chr8:22477201 8.30E-26 dispersed
Cam08g1503 Cam-Chr8:21251092 Cam08g1504 Cam-Chr8:21264245 9.50E-46 tandem
Cam04g1192 Cam-Chr4:25990888 Cam08g1503 Cam-Chr8:21251092 3.00E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52428 PF01486 K-box 2.50E-27 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1503 K09264 - csv:101220998 407.142