Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1504 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGAAGGCAGCAACTTGCAGCTTCTGAATCTGAATTTTCTCATGAAAATTGGACTCTCGAATACTACAGACTCAAGTCTAAAGTCGAACTTTTACAAAGAAACAACAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTTAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCAAGAAAAAACCAACTTATGTATGATTCCATCTCTGCACTTCAAAGAAAGGAAAGAGCAATTCAGGAGCAAAATGCCTTATTGGCTAAGCAGATAAAGGAGAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTTTTATTCCCACCACCTCCTCATCCCTCTCTAAACATTGGGCTCGCAAGTTTTGAAGGTCACCAATGA 672 39.43 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQLAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPPPPHPSLNIGLASFEGHQ 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21264245 21270097 + CaPI482276_08g015040.1 Cam08g1504 133555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1504 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam08g1504 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 Coils Coil 127 147 - -
Cam08g1504 223 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cam08g1504 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g1504 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam08g1504 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1504 223 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g1504 223 Coils Coil 153 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1192 Cam-Chr4:25990888 Cam08g1504 Cam-Chr8:21264245 8.20E-69 dispersed
Cam07g1622 Cam-Chr7:30833164 Cam08g1504 Cam-Chr8:21264245 9.20E-60 dispersed
Cam08g1504 Cam-Chr8:21264245 Cam11g1624 Cam-Chr11:29002783 2.70E-26 dispersed
Cam08g1503 Cam-Chr8:21251092 Cam08g1504 Cam-Chr8:21264245 9.50E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52429 PF01486 K-box 2.60E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1504 K09264 - csv:101219414 391.734