Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1512 ATGAGAACGGGAAAAAGCAATCAGGACGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGTTATTAATAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAATATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTAAAAAATGGTTCCGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGACAATAGCATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATTTACATGCTTCTATCCGTAGTGATGGCGTTCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACAACTGAGTGTCCCATCACCAACAATGCATCAAATCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGATTGGATTTGTCGCAAGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCAGCCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGTGAAAAAGCGGCTAAGAACATGA 999 44.24 MRTGKSNQDDEEYEEDELVAKREGPSSTSNVINSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNSISISPAMLASSQNPLDSHSGRDILQDADITNKVPLPMSLEGNLHASIRSDGVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSSHPAMANVGDLGSGDDSEQVKKRLRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21329726 21334937 - CaPI482276_08g015120.1 Cam08g1512 133563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1512 332 MobiDBLite consensus disorder prediction 297 332 - -
Cam08g1512 332 MobiDBLite consensus disorder prediction 44 62 - -
Cam08g1512 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 332 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cam08g1512 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Cam08g1512 332 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Cam08g1512 332 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Cam08g1512 332 FunFam BHLH domain class transcription factor 47 119 - -
Cam08g1512 332 MobiDBLite consensus disorder prediction 23 43 - -
Cam08g1512 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Cam08g1512 332 CDD bHLH_AtBIM_like 48 124 - -
Cam08g1512 332 MobiDBLite consensus disorder prediction 1 62 - -
Cam08g1512 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1675 Cam-Chr6:28116419 Cam08g1512 Cam-Chr8:21329726 5.10E-58 dispersed
Cam07g1628 Cam-Chr7:30880146 Cam08g1512 Cam-Chr8:21329726 6.00E-51 dispersed
Cam04g1185 Cam-Chr4:25958082 Cam08g1512 Cam-Chr8:21329726 5.20E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52430 PF00010 HLH 1.80E-13 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1512 - - - 0.0