Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1520 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCCCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTTTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA 534 58.61 MSSAHSPSSSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21408286 21408819 + CaPI482276_08g015200.1 Cam08g1520 133571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1520 177 PANTHER RING-H2 FINGER PROTEIN ATL67 15 176 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Cam08g1520 177 Pfam Ring finger domain 112 154 IPR001841 -
Cam08g1520 177 SUPERFAMILY RING/U-box 111 159 - -
Cam08g1520 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Cam08g1520 177 SMART ring_2 112 153 IPR001841 -
Cam08g1520 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 159 IPR013083 -
Cam08g1520 177 CDD RING-H2_EL5-like 112 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0149 Cam-Chr5:1665997 Cam08g1520 Cam-Chr8:21408286 2.00E-24 dispersed
Cam05g1051 Cam-Chr5:9529107 Cam08g1520 Cam-Chr8:21408286 3.40E-23 dispersed
Cam07g1528 Cam-Chr7:29911863 Cam08g1520 Cam-Chr8:21408286 5.70E-24 dispersed
Cam08g1520 Cam-Chr8:21408286 Cam10g1782 Cam-Chr10:31897858 2.30E-25 dispersed
Cam08g1520 Cam-Chr8:21408286 Cam05g0105 Cam-Chr5:1356550 3.90E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1520 - - - 0.0