Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g1520 | ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCCCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTTTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA | 534 | 58.61 | MSSAHSPSSSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR | 177 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21408286 | 21408819 | + | CaPI482276_08g015200.1 | Cam08g1520 | 133571 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g1520 | 177 | PANTHER | RING-H2 FINGER PROTEIN ATL67 | 15 | 176 | IPR044289 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Cam08g1520 | 177 | Pfam | Ring finger domain | 112 | 154 | IPR001841 | - | |
Cam08g1520 | 177 | SUPERFAMILY | RING/U-box | 111 | 159 | - | - | |
Cam08g1520 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 112 | 154 | IPR001841 | - | |
Cam08g1520 | 177 | SMART | ring_2 | 112 | 153 | IPR001841 | - | |
Cam08g1520 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 159 | IPR013083 | - | |
Cam08g1520 | 177 | CDD | RING-H2_EL5-like | 112 | 154 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0149 | Cam-Chr5:1665997 | Cam08g1520 | Cam-Chr8:21408286 | 2.00E-24 | dispersed | |
Cam05g1051 | Cam-Chr5:9529107 | Cam08g1520 | Cam-Chr8:21408286 | 3.40E-23 | dispersed | |
Cam07g1528 | Cam-Chr7:29911863 | Cam08g1520 | Cam-Chr8:21408286 | 5.70E-24 | dispersed | |
Cam08g1520 | Cam-Chr8:21408286 | Cam10g1782 | Cam-Chr10:31897858 | 2.30E-25 | dispersed | |
Cam08g1520 | Cam-Chr8:21408286 | Cam05g0105 | Cam-Chr5:1356550 | 3.90E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g1520 | - | - | - | 0.0 |