Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1546 ATGGCTGCTGCAGTATTTCATCAATCTCTTGGGAGTTTTATTATCCACGGGCAAGCTAACAGTACAACTAATTTAACAAAATTGAATTCAAAGTGTTTCAAGGTAGAAGTTGGGGTCCTCAGAAAGAAGTCTCCTAGATCTGGCAATATGAATATAAAAGCAATTCAAGCCTCTTCTTCTCAAACTTCAGTTTTTGATCACATTTCATCACCTTCAATCAACACCACTGAAGAATCGCAGAAAAAACAAAATGAAGCAGCCTTGATCTTGATTCGGCATGGAGAATCATTGTGGAACGAAAAAAACTTATTTACCGGCTGTGTTGATGTGCCACTGACTAAGAAAGGTGTGGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGCAACATACCTGTCGACATGATCTATACATCTTCGCTCATTCGTGCACAGATGACTGCTATGCTTGCTATGACTCAACATCGTCGTAAAAAGGTTCCAGTTATTGTTCATAATGAAACTGAGCAGGCAAGGGTTTGGAGTCAAATATATAGTGAAGAAACCAAAAAACAATCCATCCCAGTAATAGCATCTTGGCGATTAAATGAAAGAATGTATGGAGAACTACAGGGTCTCAATAAGCAGGAGACCGCTGATAGATATGGAAAAGAACAAGTCCACGAATGGCGTCGGAGTTACGATATTCCTCCTCCTAATGGCGAGAGCTTAGAAATGTGTGCAGAGAGAGCTGTTGCTTATTTTAAAGATCAAATTGTACCTCAACTTCAATCTGGAAAGAATGTAATGATTGCTGCACATGGAAATTCATTGAGGTCCATAATTATGTATCTAGACAAACTAACTTCTCAAGAGGTTATCAGCTTAGAGCTATCGACTGGAATACCAATGCTCTACATATTTAAAGAAGGAAACTTCATTAGGAGGGGAAGTCCTGCAGGACCTTCTGAGGCAGGCGTTTACGCTTATACCAGGAGTTTGGCTCTCTACAGACAGAAAAAGACAAGAGATGGGAAGAAAAAAGAGCATATTAAAAATCTGTTTGTAAAGCAAGCACACTATTCGTCAGATAATACAATCTCTCCTGTGTATGGAATGAACTGA 1101 39.42 MAAAVFHQSLGSFIIHGQANSTTNLTKLNSKCFKVEVGVLRKKSPRSGNMNIKAIQASSSQTSVFDHISSPSINTTEESQKKQNEAALILIRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTQHRRKKVPVIVHNETEQARVWSQIYSEETKKQSIPVIASWRLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGNFIRRGSPAGPSEAGVYAYTRSLALYRQKKTRDGKKKEHIKNLFVKQAHYSSDNTISPVYGMN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21677151 21680223 + CaPI482276_08g015460.1 Cam08g1546 133597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1546 366 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 85 312 IPR005952 GO:0006096(InterPro)|GO:0016868(InterPro)
Cam08g1546 366 SUPERFAMILY Phosphoglycerate mutase-like 88 304 IPR029033 -
Cam08g1546 366 CDD HP_PGM_like 88 307 IPR013078 -
Cam08g1546 366 PANTHER PHOSPHOGLYCERATE MUTASE 81 326 IPR005952 GO:0006096(InterPro)|GO:0016868(InterPro)
Cam08g1546 366 Gene3D - 77 312 IPR029033 -
Cam08g1546 366 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 90 99 IPR001345 GO:0003824(InterPro)
Cam08g1546 366 SMART PGAM_5 87 273 IPR013078 -
Cam08g1546 366 Pfam Histidine phosphatase superfamily (branch 1) 183 291 IPR013078 -
Cam08g1546 366 Pfam Histidine phosphatase superfamily (branch 1) 88 164 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1546 K01834 - - csv:101211372 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1939 Cam-Chr1:32791939 Cam08g1546 Cam-Chr8:21677151 2.80E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g380 . . . . . . . . Cmo05g00508 Cmo12g00114 . . . Car12g00134 Sed04g0128 . Cpe07g00121 Bhi04g00738 Tan02g2370 Cmetu03g2087 . Hepe10g0519 . Lcy13g1581 Cla08g01093 Cam08g1546 Cec08g1120 Cco08g1247 Clacu08g1248 . Cre08g1030 . . Cone17ag1233 Cone20ag0492 . . . Cme03g01506 Blo17g00214 . . Bda13g01520 . Bpe14g00345 . Bma02g00272 . . . Cma12g00144 Cma05g00486 Car05g00433 . Cpe11g00425 . . . . . . . . . . . . . . . Lsi08g00949 . Chy03g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002531 1 2 1 1 1 1 3 1 1 2 1 2 3 2 2 3 2 4 3 2 2 2 2 2 1 2 2 1 5 1 58