Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1550 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCGTCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAACAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAACCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCAACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCGTTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCGGCAGGGTCTTCGCCTTTGTCGGATCTGACGTTCCCGGATCTGACGGAATCGCCCTGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATTGATTGGGCTTCGATTTTAACATCTTGA 1095 50.14 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSFPDFSFSSSVQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21734546 21735640 + CaPI482276_08g015500.1 Cam08g1550 133601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1550 364 CDD AP2 161 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 MobiDBLite consensus disorder prediction 269 287 - -
Cam08g1550 364 MobiDBLite consensus disorder prediction 255 346 - -
Cam08g1550 364 FunFam Ethylene-responsive transcription factor 2 161 220 - -
Cam08g1550 364 Pfam AP2 domain 162 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677(InterPro)
Cam08g1550 364 Gene3D AP2/ERF domain 162 220 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 PRINTS Ethylene responsive element binding protein signature 185 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 MobiDBLite consensus disorder prediction 303 346 - -
Cam08g1550 364 ProSiteProfiles AP2/ERF domain profile. 162 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 SMART rav1_2 162 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1550 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 361 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0196 Cam-Chr1:2297017 Cam08g1550 Cam-Chr8:21734546 2.30E-28 dispersed
Cam06g0808 Cam-Chr6:11141398 Cam08g1550 Cam-Chr8:21734546 8.40E-29 dispersed
Cam07g1522 Cam-Chr7:29822499 Cam08g1550 Cam-Chr8:21734546 1.40E-33 dispersed
Cam08g1550 Cam-Chr8:21734546 Cam11g1563 Cam-Chr11:28432388 1.50E-90 dispersed
Cam01g1937 Cam-Chr1:32779559 Cam08g1550 Cam-Chr8:21734546 2.10E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52433 PF00847 AP2 4.80E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1550 K09286 - csv:101222833 577.015