Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1552 ATGACCAACCAGAAAGCTTCTCTTCCCAAAGCCAAATCACAAATCGGTGTGGCCTTTACGGTCGCTAGAATTGGGGGATTTATGGCCAATATTTCTAAGAAAAAGGTTTTGAAAAGAACTGAAAATGGCGGTGGCCGAGGCAGAGCCATTGCTTCCTCTGTTGATTTGATGAGAGCTTCTTCTCCAACTCGTCTTAACTCTCCTATTTCTCTTTCCCAATCTCCTTGGATTTTTCAACTTCCTTCTGCACTCAACATGTTCGACCAAATTACAACTGCCTCTAAAGGCAAACAAATTGTCATGTTTTTGGATTACGATGGCACTCTTTCCCCTATTGTTGAAGATCCTGATAGAGCATTCATGACCAATGAGATGAGAACTGCAGTAAAGAACATTGCTATGTGTTTTCCAACCGCCATAGTCAGCGGAAGATGCAGAGACAAGGTTTATGAATTTGTTGGATTGGCAGAGTTGTTCTATGCAGGGAGCCATGGAATGGACATACAAGGCCCAACAAAAGGCTACAATAATAAATACAAGAAAGGCAATGAAGCAGTGCTTTTCCAACCGGCAAGTGAGCTGCTGCCCATGATTGAAGAGGTACATAAAACCTTGTCAGACATAACAAAGTCCATTAATGGAGCTAAAGTGGAAAACAACAAGTTCTGTATTTCTGTGCATTTTCGCTGCGTCGAGGAAAAAAAATGGGGAGCATTGGCAGAGCAAGTAAAATCGGTGGTTAATCAATATCCTAAATTGATTCTGAGTTTAGGAAGAAAGGTACTAGAGATTCGGCCAGCAATCAAATGGGACAAAGGCAAAGCTTTGGAATTTTTGCTTGAGTCATTAGGGTTTGCAAATTCTAGTGATGTTTTGCCGGTTTATATTGGAGATGATCGTACCGACGAAGATGCATTCAAGGTTTTGCAAAGCAAAGGATTAGGGTTTGGAATCCTTGTGTCAAAATTCCCCAAGGAAACTTGTGCTTCTTATTCCTTGCAAGAACCATCCGAGGTAGAGGAGTTTCTTTGTCGTCTTGTAGATTGGAAAAGATCAATGGGAACATTATTATCCCATTCCACATTATCTGATTAA 1095 41.0 MTNQKASLPKAKSQIGVAFTVARIGGFMANISKKKVLKRTENGGGRGRAIASSVDLMRASSPTRLNSPISLSQSPWIFQLPSALNMFDQITTASKGKQIVMFLDYDGTLSPIVEDPDRAFMTNEMRTAVKNIAMCFPTAIVSGRCRDKVYEFVGLAELFYAGSHGMDIQGPTKGYNNKYKKGNEAVLFQPASELLPMIEEVHKTLSDITKSINGAKVENNKFCISVHFRCVEEKKWGALAEQVKSVVNQYPKLILSLGRKVLEIRPAIKWDKGKALEFLLESLGFANSSDVLPVYIGDDRTDEDAFKVLQSKGLGFGILVSKFPKETCASYSLQEPSEVEEFLCRLVDWKRSMGTLLSHSTLSD 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21765494 21768111 + CaPI482276_08g015520.1 Cam08g1552 133603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1552 364 CDD HAD_TPP 100 341 - -
Cam08g1552 364 Pfam Trehalose-phosphatase 102 337 IPR003337 GO:0005992(InterPro)
Cam08g1552 364 NCBIfam trehalose-phosphatase 97 347 IPR003337 GO:0005992(InterPro)
Cam08g1552 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 42 353 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(PANTHER)|GO:0005992(InterPro)
Cam08g1552 364 NCBIfam HAD-IIB family hydrolase 101 310 IPR006379 -
Cam08g1552 364 Gene3D - 99 185 IPR023214 -
Cam08g1552 364 Gene3D - 188 358 IPR023214 -
Cam08g1552 364 SUPERFAMILY HAD-like 100 349 IPR036412 -
Cam08g1552 364 FunFam Trehalose 6-phosphate phosphatase 99 186 - -
Cam08g1552 364 FunFam Trehalose 6-phosphate phosphatase 197 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1552 K01087 - - csv:101223071 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0982 Cam-Chr7:23966209 Cam08g1552 Cam-Chr8:21765494 3.70E-116 dispersed
Cam08g1552 Cam-Chr8:21765494 Cam10g0295 Cam-Chr10:5092624 4.60E-92 dispersed
Cam01g1936 Cam-Chr1:32761903 Cam08g1552 Cam-Chr8:21765494 1.40E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117