Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1580 ATGGCTGCCGCCCCTTCTGTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCCCTCGACAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCCTACAAGAACGTCATCGGCGCTCGCAGGGCTTCCTGGCGTATCATTTCCTCCATCGAACAAAAGGAGGAGAGCCGAGGCAACGACGACCATGTCTCTGTGATCCGTGACTATAGATCCAAAATTGAGACCGAACTCTCCAATATTTGCGATGGAATCCTCAAGCTTCTCGATTCCAGACTCATTCCCTCCGCCGCTTCCGGAGATTCCAAGGTTTTTTACCTCAAAATGAAGGGAGATTACCATAGATACCTCGCCGAATTCAAAACCGGAGCCGAACGCAAGGAAGCTGCTGAAAGCACTCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCTGAGTTGCCTCCTACACATCCGATCCGACTTGGATTGGCCCTTAACTTCTCTGTATTCTACTATGAAATTTTGAATTCACCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATCGCTGAATTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTGATCATGCAGCTTCTTCGCGATAATCTCACTCTCTGGACATCGGACATGCAGGATGATGGTGCTGATGAGATTAAAGAAGCTCCCCCCAAGCGTGAGGATGAAAAGCAGTGA 786 50.0 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21977294 21978943 + CaPI482276_08g015800.1 Cam08g1580 133631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1580 261 FunFam 14-3-3 protein epsilon 4 251 - -
Cam08g1580 261 Gene3D - 2 251 IPR036815 -
Cam08g1580 261 MobiDBLite consensus disorder prediction 243 261 - -
Cam08g1580 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Cam08g1580 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cam08g1580 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cam08g1580 261 Coils Coil 14 41 - -
Cam08g1580 261 SMART 1433_4 8 251 IPR023410 -
Cam08g1580 261 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cam08g1580 261 MobiDBLite consensus disorder prediction 242 261 - -
Cam08g1580 261 PIRSF 14-3-3 2 250 IPR000308 -
Cam08g1580 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Cam08g1580 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cam08g1580 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cam08g1580 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cam08g1580 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cam08g1580 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cam08g1580 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1563 Cam-Chr8:21859106 Cam08g1580 Cam-Chr8:21977294 4.50E-91 dispersed
Cam08g1580 Cam-Chr8:21977294 Cam11g1470 Cam-Chr11:27424338 7.80E-102 dispersed
Cam07g1646 Cam-Chr7:31040438 Cam08g1580 Cam-Chr8:21977294 1.40E-119 transposed
Cam11g1448 Cam-Chr11:27210148 Cam08g1580 Cam-Chr8:21977294 3.90E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1580 K06630 - csv:101220164 508.834