Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1598 TTGCAATCATTCCCTTCTGCCGTCGTGAAAGCTTCTGACTTTGCCACAGCATTACCGGCGAGTAGATGTTTCATACATGCTACAGGCTCATGTCATTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACCCAATGCCAGTCGAGAAGAGGTTAAAAAGGCGTACCATGCGTTGGCGAAAAAGTACCATCCAGATGCAAATAAGAACAATCCGTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCGTGGTGGAGAATTTGAAAATCTAGGGTTTGGTGCTGGTGACGCAGAGGGGTTTAGCTATACTTATCGAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTACCTCAGATATTCAGGTTGACCTGTCATTATCTTTTACCGAAGCTGCAAAAGGATGCACAAAGCATTTGTCCTTTGATGCTTTTGTTCCCTGTGACTCTTGCTATGGGCGTGGCTATCCAGTAAATGCAACGAAAAGAAGTTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCCTTTAAAGCGACATGCACCACTTGCAAAGGATCAGGTCAAATCATTAAGGAATTGTGCGTGCAATGCAGGGGAATGGGGGTTGTGGAGGGTGTCAAGGAGGTTACAGTTACTATACCTGCTGGGGTTGATTCTGGAGATACAATTCGTGTACCAGAAGCTGGTAATAGTGGTGGACGAGAAAGTCATCCTGGCAACTTGATCATTAAATTGAAGGTTGCTGAAGATCGTGTCTTTAAGAGGGATGGTGTGGATATTTATGTGGATTCCAATATCAGCTTTACTCAAGCTATTCTTGGTGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATACAAATAAATATACCAAAGGGCGTTCAGCCAGGACAACTCTTAGTACTGAGAGGGAAAGGATTGCCAAAACATGGGCTTTTTGTTGATCGTGGAGATCAATATGTGCGGTTCCGTATTAAATTTCCAACTGCAATAACTGAACGCCAACGTGCCATTTTAGAAGAGTTTGCTGAAGAAGAAATAAAGAATGGGATTGACAACTCAAGTGAAGCAAGTTGGTGGCAACAAATTCTTAACCGTGTTGGAGAACCTATGTTTATAGATACATGGTATAAGGTCAATTTTTCAGTACCTGGGTTGCAGTTTCAAATTTGTAAAGATTACCCGAGCTACATTACACTTGTTGAGAAAACTTGCATAGATATTACATTGAGTAGATGGAAGACCAATGAATCTCTTCGCTGGAAGGAAGTTCTTTCTTTTCTTCGTTCCTCCACAAGCTTTCCTGTAGGTTTGATCCATTACTTTCGAGATGCTCAGCGGCTTAGGTTTTTGCTATGA 1455 42.41 LQSFPSAVVKASDFATALPASRCFIHATGSCHSIERDYYEILGVQPNASREEVKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRRGGEFENLGFGAGDAEGFSYTYRTHFSDSFQKIFSEIFEHETSRFTSDIQVDLSLSFTEAAKGCTKHLSFDAFVPCDSCYGRGYPVNATKRSCPTCRGLGRVTIPPFKATCTTCKGSGQIIKELCVQCRGMGVVEGVKEVTVTIPAGVDSGDTIRVPEAGNSGGRESHPGNLIIKLKVAEDRVFKRDGVDIYVDSNISFTQAILGGKVEVPTLSGRIQINIPKGVQPGQLLVLRGKGLPKHGLFVDRGDQYVRFRIKFPTAITERQRAILEEFAEEEIKNGIDNSSEASWWQQILNRVGEPMFIDTWYKVNFSVPGLQFQICKDYPSYITLVEKTCIDITLSRWKTNESLRWKEVLSFLRSSTSFPVGLIHYFRDAQRLRFLL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22139349 22149980 - CaPI482276_08g015980.1 Cam08g1598 133649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1598 484 Pfam DnaJ domain 37 99 IPR001623 -
Cam08g1598 484 SMART dnaj_3 36 94 IPR001623 -
Cam08g1598 484 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 164 235 IPR036410 -
Cam08g1598 484 FunFam Chaperone protein dnaJ 1, mitochondrial 280 388 - -
Cam08g1598 484 SUPERFAMILY HSP40/DnaJ peptide-binding domain 148 293 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cam08g1598 484 Gene3D - 148 277 - -
Cam08g1598 484 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 19 380 - GO:0005737(PANTHER)|GO:0042026(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)
Cam08g1598 484 ProSitePatterns Nt-dnaJ domain signature. 79 98 IPR018253 -
Cam08g1598 484 Gene3D - 173 206 - -
Cam08g1598 484 Gene3D - 207 241 - -
Cam08g1598 484 Gene3D DnaJ domain 34 147 IPR036869 -
Cam08g1598 484 Pfam DnaJ C terminal domain 150 360 IPR002939 -
Cam08g1598 484 CDD DnaJ_zf 177 233 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cam08g1598 484 Hamap Chaperone protein DnaJ [dnaJ]. 34 426 IPR012724 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0009408(InterPro)|GO:0051082(InterPro)
Cam08g1598 484 SUPERFAMILY HSP40/DnaJ peptide-binding domain 284 371 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cam08g1598 484 Gene3D - 280 389 - -
Cam08g1598 484 SUPERFAMILY Chaperone J-domain 36 126 IPR036869 -
Cam08g1598 484 CDD DnaJ_C 148 361 - -
Cam08g1598 484 PRINTS DnaJ domain signature 74 94 IPR001623 -
Cam08g1598 484 PRINTS DnaJ domain signature 94 113 IPR001623 -
Cam08g1598 484 PRINTS DnaJ domain signature 39 57 IPR001623 -
Cam08g1598 484 PRINTS DnaJ domain signature 57 72 IPR001623 -
Cam08g1598 484 ProSiteProfiles dnaJ domain profile. 37 102 IPR001623 -
Cam08g1598 484 CDD DnaJ 37 91 IPR001623 -
Cam08g1598 484 ProSiteProfiles Zinc finger CR-type profile. 164 238 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cam08g1598 484 Pfam DnaJ central domain 177 233 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1598 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1598 Cam-Chr8:22139349 Cam09g0387 Cam-Chr9:4228300 2.00E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30