Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1605 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCTCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACAGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACTTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 738 50.27 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYLYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22183147 22183884 - CaPI482276_08g016050.1 Cam08g1605 133656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1605 245 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cam08g1605 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Cam08g1605 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cam08g1605 245 SUPERFAMILY Homeodomain-like 167 243 IPR009057 -
Cam08g1605 245 FunFam Zinc-finger homeodomain protein 2 175 243 - -
Cam08g1605 245 MobiDBLite consensus disorder prediction 20 51 - -
Cam08g1605 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cam08g1605 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam08g1605 245 MobiDBLite consensus disorder prediction 150 179 - -
Cam08g1605 245 MobiDBLite consensus disorder prediction 1 51 - -
Cam08g1605 245 Gene3D - 166 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2000 Cam-Chr1:33246538 Cam08g1605 Cam-Chr8:22183147 5.20E-42 dispersed
Cam08g1605 Cam-Chr8:22183147 Cam11g0009 Cam-Chr11:1609440 1.50E-46 dispersed
Cam01g1893 Cam-Chr1:32420380 Cam08g1605 Cam-Chr8:22183147 1.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52436 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1605 - - - 0.0