Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1605 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCTCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACAGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACTTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 738 50.27 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYLYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22183147 22183884 - CaPI482276_08g016050.1 Cam08g1605 133656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1605 245 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cam08g1605 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Cam08g1605 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cam08g1605 245 SUPERFAMILY Homeodomain-like 167 243 IPR009057 -
Cam08g1605 245 FunFam Zinc-finger homeodomain protein 2 175 243 - -
Cam08g1605 245 MobiDBLite consensus disorder prediction 20 51 - -
Cam08g1605 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cam08g1605 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam08g1605 245 MobiDBLite consensus disorder prediction 150 179 - -
Cam08g1605 245 MobiDBLite consensus disorder prediction 1 51 - -
Cam08g1605 245 Gene3D - 166 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1605 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2000 Cam-Chr1:33246538 Cam08g1605 Cam-Chr8:22183147 5.20E-42 dispersed
Cam08g1605 Cam-Chr8:22183147 Cam11g0009 Cam-Chr11:1609440 1.50E-46 dispersed
Cam01g1893 Cam-Chr1:32420380 Cam08g1605 Cam-Chr8:22183147 1.20E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52436 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cam TF