Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1609 ATGATGGGCCCACCTCCCCAGACACCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTACTCTTCGGCGGCTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAGGGGAAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCTGAAGAGAATTGCATTTTTGATAATAACTACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTCCGCAAGATTAACGACGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACATCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1281 45.98 MMGPPPQTPAPSASAIVHVSAWDEKDSIPVRLATLRRLLGSVFRFDWEIGTERGEEKRGKGIFLAMAPSFDLAVSNLLCAEENCIFDNNYDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKINDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22257233 22261119 - CaPI482276_08g016090.1 Cam08g1609 133660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1609 426 Gene3D - 148 265 - -
Cam08g1609 426 SMART Cyclin_C_2 267 392 IPR004367 -
Cam08g1609 426 SMART cyclin_7 170 258 IPR013763 -
Cam08g1609 426 CDD CYCLIN_AtCycD-like_rpt1 164 262 - -
Cam08g1609 426 MobiDBLite consensus disorder prediction 400 426 - -
Cam08g1609 426 Pfam Cyclin, C-terminal domain 267 359 IPR004367 -
Cam08g1609 426 Gene3D - 137 346 - -
Cam08g1609 426 SUPERFAMILY Cyclin-like 250 360 IPR036915 -
Cam08g1609 426 MobiDBLite consensus disorder prediction 409 426 - -
Cam08g1609 426 PANTHER CYCLINS 137 334 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam08g1609 426 FunFam D2/4-type cyclin 148 263 - -
Cam08g1609 426 FunFam D6-type cyclin 264 353 - -
Cam08g1609 426 CDD CYCLIN_AtCycD-like_rpt2 267 355 - -
Cam08g1609 426 Pfam Cyclin, N-terminal domain 137 264 IPR006671 -
Cam08g1609 426 SUPERFAMILY Cyclin-like 129 264 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1197 Cam-Chr2:23817219 Cam08g1609 Cam-Chr8:22257233 7.40E-30 dispersed
Cam05g2226 Cam-Chr5:30530614 Cam08g1609 Cam-Chr8:22257233 1.30E-33 dispersed
Cam08g1609 Cam-Chr8:22257233 Cam10g0993 Cam-Chr10:22102980 3.60E-48 dispersed
Cam05g2700 Cam-Chr5:34393106 Cam08g1609 Cam-Chr8:22257233 1.10E-45 transposed
Cam09g2102 Cam-Chr9:35595801 Cam08g1609 Cam-Chr8:22257233 8.30E-48 transposed
Cam01g1891 Cam-Chr1:32408441 Cam08g1609 Cam-Chr8:22257233 1.40E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1609 K18810 - csv:101216206 639.417