Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1611 ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGACTGGAATTCGATACAATGGAGTCGACAACGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTTCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGCTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGTGTACGGCCCGGCGACTACAATCTGTATGCATGGGTCCCCGGCTTTATTGGAGATTATCGTTACGACGCTCTCATCAACATTACAGAAGGTAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGCCTGTGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACCGTTGGTGTCAGCGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAATGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACATACAAGCTTCGGGTTGCATTGGCCTCCGCTTCACTTGCAGAATTACAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGAGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGTCCTTTTCAAGCCATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCTTAA 1920 48.8 MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYASEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLRVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHP 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22282428 22288773 + CaPI482276_08g016110.1 Cam08g1611 133662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1611 639 CDD RGL4_N 8 293 - -
Cam08g1611 639 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cam08g1611 639 SUPERFAMILY Starch-binding domain-like 330 430 IPR013784 GO:0030246(InterPro)
Cam08g1611 639 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
Cam08g1611 639 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cam08g1611 639 Gene3D - 329 429 - -
Cam08g1611 639 Gene3D - 5 301 IPR014718 GO:0030246(InterPro)
Cam08g1611 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Cam08g1611 639 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Cam08g1611 639 SUPERFAMILY Galactose mutarotase-like 11 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cam08g1611 639 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cam08g1611 639 Gene3D - 439 629 - -
Cam08g1611 639 CDD RGL4_M 332 431 IPR029413 -
Cam08g1611 639 CDD RGL4_C 443 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1611 Cam-Chr8:22282428 Cam11g1493 Cam-Chr11:27738624 1.40E-282 dispersed
Cam01g2243 Cam-Chr1:34859465 Cam08g1611 Cam-Chr8:22282428 8.50E-203 transposed
Cam01g1868 Cam-Chr1:32217605 Cam08g1611 Cam-Chr8:22282428 8.70E-217 wgd
Cam11g1492 Cam-Chr11:27716227 Cam08g1611 Cam-Chr8:22282428 4.20E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1611 K18195 - csv:101215720 1245.34