Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1616 ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGGCGGCTGATGACGGGAGACATACGACAATTGACCATATCATGCGCGAGGCAAATATGGGTAGTGGCACGAAGTTCTAGTATGCCAACGTGTGTAGACCTGTATTACACTGGCAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGCTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAAAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGTCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAGTCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCAGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGGGCTTGGTTTCTGGTGCAGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGTGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGATCTCAGAATTTAGTTTCTCTCTCTGTTTTCCTGGTTATGCCATGTTTTTTCTATCATTGGGTTGTAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATTAGCTATTTTTCATAACAATTCCCAATTTCTTGGGGCAACAGCTCTTGTGTTTCATTGGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTTGGATACCGATATAGACATCCCCACTAACTTTGATTAG 2751 47.98 MKLFSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRRLMTGDIRQLTISCARQIWVVARSSSMPTCVDLYYTGRLGRTQTTINGRGIDDIAGRGCGASGTSNKVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNLLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLSELMYARAQPLTMGDQIASVPDCGDSGEPLDSRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKRPLWLFLASFNQALVLGLVSGAVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKISEFSFSLCFPGYAMFFLSLGCSMKFCCQTLYPQSFMLWQLAIFHNNSQFLGATALVFHWVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPLDTDIDIPTNFD 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22366638 22393931 - CaPI482276_08g016160.1 Cam08g1616 133667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1616 916 ProSitePatterns GATA-type zinc finger domain. 401 428 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 CDD ZnF_GATA 767 811 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 ProSiteProfiles Tify domain profile. 266 301 IPR010399 -
Cam08g1616 916 MobiDBLite consensus disorder prediction 322 337 - -
Cam08g1616 916 MobiDBLite consensus disorder prediction 366 403 - -
Cam08g1616 916 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 395 445 - -
Cam08g1616 916 MobiDBLite consensus disorder prediction 838 916 - -
Cam08g1616 916 ProSiteProfiles Tify domain profile. 569 604 IPR010399 -
Cam08g1616 916 Pfam CCT motif 697 738 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 Pfam CCT motif 333 375 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 Pfam GATA zinc finger 768 804 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 Pfam GATA zinc finger 401 437 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 ProSiteProfiles GATA-type zinc finger domain profile. 762 810 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 MobiDBLite consensus disorder prediction 322 341 - -
Cam08g1616 916 ProSitePatterns GATA-type zinc finger domain. 768 795 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 MobiDBLite consensus disorder prediction 442 461 - -
Cam08g1616 916 ProSiteProfiles CCT domain profile. 697 739 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 ProSiteProfiles GATA-type zinc finger domain profile. 395 454 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 MobiDBLite consensus disorder prediction 526 546 - -
Cam08g1616 916 Gene3D - 760 818 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam08g1616 916 Gene3D - 391 450 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam08g1616 916 ProSiteProfiles CCT domain profile. 333 375 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 CDD ZnF_GATA 400 447 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 Pfam tify domain 269 300 IPR010399 -
Cam08g1616 916 SMART tify_2 266 301 IPR010399 -
Cam08g1616 916 SMART tify_2 569 601 IPR010399 -
Cam08g1616 916 PANTHER GATA TRANSCRIPTION FACTOR 28 516 853 IPR045280 GO:0006355(InterPro)
Cam08g1616 916 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 763 812 - -
Cam08g1616 916 SMART GATA_3 395 448 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 SMART GATA_3 762 815 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1616 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1616 Cam-Chr8:22366638 Cam09g1567 Cam-Chr9:26431473 5.00E-63 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g0160 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cam08g1616 . 242 465 Tify Gene Family AT4G24470 58.3 8.4e-66 247.7
Cam09g1567 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cam09g0160 . 1 290 Tify Gene Family AT1G51600 59.0 3.7e-87 318.5
Cam09g1567 . 86 303 Tify Gene Family AT1G51600 54.4 6.6e-52 201.4
Cam08g1616 . 236 445 Tify Gene Family AT1G51600 53.1 9.8e-48 187.6
Cam08g1616 . 242 465 Tify Gene Family AT4G24470 58.3 8.4e-66 247.7
Cam09g1567 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cam09g0160 . 1 290 Tify Gene Family AT1G51600 59.0 3.7e-87 318.5
Cam09g1567 . 86 303 Tify Gene Family AT1G51600 54.4 6.6e-52 201.4
Cam08g1616 . 236 445 Tify Gene Family AT1G51600 53.1 9.8e-48 187.6
Cam09g0160 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cam06g0650 . 1 180 Tify Gene Family AT4G14713 53.1 1.0e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52437 PF06203 CCT 4.50E-13 CL0281 Cam TF