Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1616 ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGGCGGCTGATGACGGGAGACATACGACAATTGACCATATCATGCGCGAGGCAAATATGGGTAGTGGCACGAAGTTCTAGTATGCCAACGTGTGTAGACCTGTATTACACTGGCAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGCTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAAAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGTCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAGTCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCAGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGGGCTTGGTTTCTGGTGCAGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGTGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGATCTCAGAATTTAGTTTCTCTCTCTGTTTTCCTGGTTATGCCATGTTTTTTCTATCATTGGGTTGTAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATTAGCTATTTTTCATAACAATTCCCAATTTCTTGGGGCAACAGCTCTTGTGTTTCATTGGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTTGGATACCGATATAGACATCCCCACTAACTTTGATTAG 2751 47.98 MKLFSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRRLMTGDIRQLTISCARQIWVVARSSSMPTCVDLYYTGRLGRTQTTINGRGIDDIAGRGCGASGTSNKVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNLLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLSELMYARAQPLTMGDQIASVPDCGDSGEPLDSRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKRPLWLFLASFNQALVLGLVSGAVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKISEFSFSLCFPGYAMFFLSLGCSMKFCCQTLYPQSFMLWQLAIFHNNSQFLGATALVFHWVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPLDTDIDIPTNFD 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22366638 22393931 - CaPI482276_08g016160.1 Cam08g1616 133667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1616 916 ProSitePatterns GATA-type zinc finger domain. 401 428 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 CDD ZnF_GATA 767 811 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 ProSiteProfiles Tify domain profile. 266 301 IPR010399 -
Cam08g1616 916 MobiDBLite consensus disorder prediction 322 337 - -
Cam08g1616 916 MobiDBLite consensus disorder prediction 366 403 - -
Cam08g1616 916 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 395 445 - -
Cam08g1616 916 MobiDBLite consensus disorder prediction 838 916 - -
Cam08g1616 916 ProSiteProfiles Tify domain profile. 569 604 IPR010399 -
Cam08g1616 916 Pfam CCT motif 697 738 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 Pfam CCT motif 333 375 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 Pfam GATA zinc finger 768 804 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 Pfam GATA zinc finger 401 437 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 ProSiteProfiles GATA-type zinc finger domain profile. 762 810 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 MobiDBLite consensus disorder prediction 322 341 - -
Cam08g1616 916 ProSitePatterns GATA-type zinc finger domain. 768 795 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 MobiDBLite consensus disorder prediction 442 461 - -
Cam08g1616 916 ProSiteProfiles CCT domain profile. 697 739 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 ProSiteProfiles GATA-type zinc finger domain profile. 395 454 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 MobiDBLite consensus disorder prediction 526 546 - -
Cam08g1616 916 Gene3D - 760 818 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam08g1616 916 Gene3D - 391 450 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam08g1616 916 ProSiteProfiles CCT domain profile. 333 375 IPR010402 GO:0005515(InterPro)
Cam08g1616 916 CDD ZnF_GATA 400 447 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 Pfam tify domain 269 300 IPR010399 -
Cam08g1616 916 SMART tify_2 266 301 IPR010399 -
Cam08g1616 916 SMART tify_2 569 601 IPR010399 -
Cam08g1616 916 PANTHER GATA TRANSCRIPTION FACTOR 28 516 853 IPR045280 GO:0006355(InterPro)
Cam08g1616 916 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 763 812 - -
Cam08g1616 916 SMART GATA_3 395 448 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1616 916 SMART GATA_3 762 815 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1616 Cam-Chr8:22366638 Cam09g1567 Cam-Chr9:26431473 5.00E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52437 PF06203 CCT 4.50E-13 CL0281 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1616 - - - 0.0