Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1627 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAACCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGCTTGAAAATGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGAATGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGGCCTCCTTGCGCAAATTGA 693 47.33 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLHSSNLGKLEYPSLELQLENENSNHVRLNKEVADMSQQLRQMRGEDLQGMNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGPPCAN 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22477201 22484198 - CaPI482276_08g016270.1 Cam08g1627 133678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1627 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam08g1627 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam08g1627 230 MobiDBLite consensus disorder prediction 195 230 - -
Cam08g1627 230 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g1627 230 Coils Coil 81 115 - -
Cam08g1627 230 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g1627 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 FunFam Transcription factor, MADS-box 13 83 - -
Cam08g1627 230 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g1627 230 MobiDBLite consensus disorder prediction 199 216 - -
Cam08g1627 230 Coils Coil 151 178 - -
Cam08g1627 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1249 Cam-Chr4:26467728 Cam08g1627 Cam-Chr8:22477201 1.50E-12 dispersed
Cam08g1503 Cam-Chr8:21251092 Cam08g1627 Cam-Chr8:22477201 8.30E-26 dispersed
Cam08g1627 Cam-Chr8:22477201 Cam10g0941 Cam-Chr10:21328192 1.20E-45 dispersed
Cam01g1867 Cam-Chr1:32204453 Cam08g1627 Cam-Chr8:22477201 1.80E-28 wgd
Cam11g1495 Cam-Chr11:27771018 Cam08g1627 Cam-Chr8:22477201 8.30E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52439 PF01486 K-box 1.50E-15 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1627 - - - 0.0