Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1647 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATAATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATCTGCTACTCGACTCCCTCGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTTCTATGGCAGATGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGAACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCACGACGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCGTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGCAAATCAAGGATCACCAAGAACAAGAACCGATGCCTCGCCATTCTTTTGCTAAATAGAGAAGTAACAATGGCATTGTCGTGGTATTTGTCCGAAGCCCAATATCAGCTGGTTATTCTCCTGATCTTACTTATAGAAGAAATTAGTTTCATATGA 1455 42.34 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGSMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIEQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGHDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKNRCLAILLLNREVTMALSWYLSEAQYQLVILLILLIEEISFI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22655118 22661113 - CaPI482276_08g016470.1 Cam08g1647 133698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1647 484 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Cam08g1647 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g1647 484 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Cam08g1647 484 Gene3D Kinase associated domain 1, KA1 307 428 - -
Cam08g1647 484 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Cam08g1647 484 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam08g1647 484 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Cam08g1647 484 CDD CIPK_C 309 424 - -
Cam08g1647 484 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Cam08g1647 484 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Cam08g1647 484 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1647 484 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Cam08g1647 484 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Cam08g1647 484 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1647 484 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1800 Cam-Chr5:26800703 Cam08g1647 Cam-Chr8:22655118 2.60E-105 dispersed
Cam08g1647 Cam-Chr8:22655118 Cam10g1383 Cam-Chr10:27409550 3.10E-96 dispersed
Cam11g0321 Cam-Chr11:4735078 Cam08g1647 Cam-Chr8:22655118 1.30E-13 dispersed
Cam06g1220 Cam-Chr6:23449650 Cam08g1647 Cam-Chr8:22655118 3.80E-170 transposed
Cam01g1905 Cam-Chr1:32549312 Cam08g1647 Cam-Chr8:22655118 1.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85382 PF00069 Pkinase 2.40E-71 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1647 - - - 0.0