Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1649 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTGCGAAGAGATGCAAATTGGGAAGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTGTAAATTTTCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATACCGCCATGGAAGTAGCAGCAGCAGCCACTACGCCTCTGCCATTTCAACCAGCGCATCCGAATGTGGAGCGAGAAGAAGAGGAAGAGGAACTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGGCTTGTAAAATGGAGCCGAACCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGCCAACCATCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTAGAAGGATCAAATCCGAGGACGAATTCATTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGGAATTCACCAAAATTTGAAGTAGAAAACAGAAATGGAGACACGAGAATCGAGATTTGCTGTGCGGGAAAGCCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCTACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1014 45.07 MELDEHVFLEELMALRRDANWEAIPTEITDLCSNAWAFDYCFDQSTVNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYTAMEVAAAATTPLPFQPAHPNVEREEEEEELGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNPRTNSLKNTKPSEFVVRNSPKFEVENRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGSCL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22691664 22693938 + CaPI482276_08g016490.1 Cam08g1649 133700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1649 337 Pfam Helix-loop-helix DNA-binding domain 174 216 IPR011598 GO:0046983(InterPro)
Cam08g1649 337 Coils Coil 108 128 - -
Cam08g1649 337 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
Cam08g1649 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983(InterPro)
Cam08g1649 337 Gene3D - 156 231 IPR036638 GO:0046983(InterPro)
Cam08g1649 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
Cam08g1649 337 Coils Coil 206 226 - -
Cam08g1649 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 128 332 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam08g1649 337 CDD ACT_UUR-ACR-like 262 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1649 Cam-Chr8:22691664 Cam11g1195 Cam-Chr11:23588468 2.50E-12 dispersed
Cam03g0398 Cam-Chr3:5118781 Cam08g1649 Cam-Chr8:22691664 1.30E-32 transposed
Cam05g1414 Cam-Chr5:16542795 Cam08g1649 Cam-Chr8:22691664 4.90E-34 transposed
Cam01g1862 Cam-Chr1:32156809 Cam08g1649 Cam-Chr8:22691664 3.40E-65 wgd
Cam11g1503 Cam-Chr11:27865081 Cam08g1649 Cam-Chr8:22691664 3.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52441 PF00010 HLH 6.20E-10 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1649 - - - 0.0