Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1671 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACTGCCACTGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGATGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTTCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.28 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22955097 22956880 - CaPI482276_08g016710.1 Cam08g1671 133722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1671 355 MobiDBLite consensus disorder prediction 185 209 - -
Cam08g1671 355 Gene3D - 238 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam08g1671 355 PIRSF Txn_fac_GATA_plant 22 334 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cam08g1671 355 PANTHER GATA TRANSCRIPTION FACTOR 40 311 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cam08g1671 355 SMART GATA_3 239 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1671 355 MobiDBLite consensus disorder prediction 178 243 - -
Cam08g1671 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1671 355 Pfam GATA zinc finger 245 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1671 355 FunFam GATA transcription factor 237 322 - -
Cam08g1671 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Cam08g1671 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam08g1671 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1671 Cam-Chr8:22955097 Cam09g0008 Cam-Chr9:1040706 7.60E-68 dispersed
Cam11g1533 Cam-Chr11:28166990 Cam08g1671 Cam-Chr8:22955097 1.10E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52443 PF00320 GATA 1.80E-15 CL0167 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1671 - - - 0.0