Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1682 ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA 666 44.29 MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23102991 23103656 - CaPI482276_08g016820.1 Cam08g1682 133733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1682 221 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Cam08g1682 221 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 MobiDBLite consensus disorder prediction 1 43 - -
Cam08g1682 221 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677(InterPro)
Cam08g1682 221 SMART rav1_2 41 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 CDD AP2 42 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 Pfam AP2 domain 40 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 IPR051032 -
Cam08g1682 221 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1682 221 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1682 Cam-Chr8:23102991 Cam09g0177 Cam-Chr9:2557370 5.00E-41 dispersed
Cam07g1238 Cam-Chr7:26776299 Cam08g1682 Cam-Chr8:23102991 3.30E-39 transposed
Cam01g1937 Cam-Chr1:32779559 Cam08g1682 Cam-Chr8:23102991 2.50E-16 wgd
Cam11g1537 Cam-Chr11:28196751 Cam08g1682 Cam-Chr8:23102991 4.90E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52444 PF00847 AP2 5.30E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1682 K09286 - csv:101206242 340.117