Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1690 ATGGTGAATTCCGTGGTGGGGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCGATGAACATCGAGATCTGCGATATGTTGAACCATGACCCTGGGCAAGCGAAAGATGTTGTTAAAGGTATAAAGAAACGCCTTGGAAGCAAGAACGCAAAAGTTCAACTTCTTGCCCTGACGCTGTTGGAAACAATCATTAAGAATTGTGGGGACATTGTTCATATGCATGTGGCTGAGAAGGGTCTTCTTCATGAGATGGTAAAAATGGTGAAAAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATATTGATTCTGATAGATACTTGGCAAGAAGCTTTTGGAGGCCCTAGGGCAAGATATCCACAGTATTATGCCGCATACCAGGAATTGTTGCGTGCTGGGGCAGTTTTCCCCCAGAGATCTGAGAGCTCTGCACCTGTATTCACCCCCCCACAAACACAACCTTTGTCATCGTATCCTCCTAATCTACGGAATCCCGATCATAATCAGCAAGATGGTGCCGAGACCTCTGCTGAGTCTGAGTTTCCGACCTTAAGCCTGACTGAAATTCAAAATGCTCGTGGAATTATGGATGTTCTTTCAGAAATGCTTAATGCATTAGAACCAGGGAATAAAGAGGCTATCAGACAGGAAGTTATTGTTGACTTGGTTGACCAGTGCCGTACTTACAAACAGAGGGTGGTTCACCTTGTTAACTCAACTGCGGATGAGTCACTACTTTGCCAAGGACTTGCACTTAATGATGATCTTCAGAGGCTACTTGCTAGGCATGAATCTATTTCTTCTGGAAATCCTGTTGTTCAGAAACCAAAGTCTGAATCTGCTACAACACTTGTCGATGGAGATCGGCCTCTTATCGACACTGGTGATAACAGCAAACAGCCTGACACAAAAGCTGCCGCGTCAAATGCCGGTGAAGGTTCTCAAACCCTGAACCAGTTGTTGCTTCCTGCACCAGCTGCAACTAATGGGGGGCCTCTTCCAGGCAGAGTTGAACCCAGTGTGGACCTGCTGAGCGGTGACTTCAATTCACCCAAGGCAGAGACTTCATTGGCTCTTGTTCCTCTTGGAGAGCAACAACCCAATCCTCCTGCATCGGATCAAAATGCTCTTGTTTTATTTGATATGTTCTCTGATGGTAACAATGCCTCTAATCCTGCAAATCCCCCTCCTATCAATCCCGGTGGGCAACCCCCACACCCACATGCTTCCCAATTTCAACAGCAGCAACCGCTGCCGCAGCAGCAGCAGCAGCCTAATGTTCATTCCCCACAAGCTGGATTATATCCGAATGGGAATGTCATGAACATGGGTTCGCCTAATTATGAGCAATCGATATACATGCAGGGCCCAGGTTCTGCATGGAATGGTCAAACTTCTCCTCAGCAGCAACAGCAACCCCATTCACCTGGCTATGGTTCGCAAACTGGTTCATTGCCGCCTCCACCCTGGGAAGCTCAGTCTTCTGATGATGGTAGCCCAGTATCAGGCTCTCATTACCCTCACCCAATGCAGGTTACTACTCAGGTTATCGTTTCACACGGACTCGGTGGACATCCCCAAGGACCTCAATCAATGGGGAACGAGGTTGTAGGTATAGGTATGTACATCCAGCCAATAACGAGTGGTCAAATGTCTAACATGAATAGCCATGTTAATCCAAACCATCAGTTGGGTATGCCAATGCCTCCGCAGATCCCTGGCATGCAAAATATGGGTATGCCGACGCCTCCGCAGATCCCCGGCATGCAAAATATGGGTATGTCGACGCCTCCGCAACATCTGCAACATCCACAAGCTAACCAGATGACACAACCCTATTACCCTCAACAGATGTATGGCAACCACAACCAATACAACCCTGGCTATGGCTATGGTCATGGTCAACCTCAGGTTCCCCAATATCTTGAGCAGCAAATGTATGGCCTTTCCGTTAGAGATGATATGAGTATGAGCAATTCGTCTTCTCAGGCTTCTGCTTTATCTTATGTGCCTCCCATGAAGCCAGCCAATAAACCAGAGGATAAACTGTTCGGCGACCTCGTCGACATTGCAAAATTCAAACCCGGGAAATCGACTCCTGGTAGAGCTGGTAGCATATTAGAATCAAAAGACAGACCGCAAAGCACGTTCCATAGATATCCTCTCCGATTAAGGCTTCGGCGCTTCATCCTTTGCGGCATCTTCCAATTGCCTCGAGCTCGTTTCTGGACGACAAATCGATCTTATTGGCGATTTTTTTTTGGTACCGGTTGCAGTTTGTCGGCCGGTAATTTTGCTGGTTTGAGAATTCTAGGCTTGAAGCTGCTTGTTTTGTCTGGGAGAATCTATAATGCAGGCCTCAAGAGCAAGGGACCGTCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTCTCCGTACCTGAGCAATACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGATATATTGAAGAATGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCTGAACCTGATAGCCCCCTAAACTGTGATTCTGGAATTCTTCTAATTGATTGTGTGAGTGTTTTCAGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGATATCAATCAATGGCAAAGATGTACACAAGGCTTGCTGCCATGCCCAAAAAGGGTTGATTTTCCATTGCTTCCTCTTTGCCATACATTTGAATTTGACGTTGCTGCTGTCGAGAAGGAGATTGCAGAATGTGAGCAAATCGAGACAGCAGAATGACTTGCTCAGGAAAAAATTTTGTGGTTACGTGGATGGGTGGCTTCAATTTTCCAAGACTCGAGAAGGGTATTTTCCTGCAAAAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTGTGTATTTCCTTTGAGCCCCATATACACCATCATCTCTTTTGCGACCGCTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAAGATGATTCTCCACCTTTCTATCAGTTGCAACATGAAGAACATGCCTTAGCTTATGGGTAA 3117 46.33 MVNSVVGRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRLGSKNAKVQLLALTLLETIIKNCGDIVHMHVAEKGLLHEMVKMVKKKPDFRVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSESSAPVFTPPQTQPLSSYPPNLRNPDHNQQDGAETSAESEFPTLSLTEIQNARGIMDVLSEMLNALEPGNKEAIRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHESISSGNPVVQKPKSESATTLVDGDRPLIDTGDNSKQPDTKAAASNAGEGSQTLNQLLLPAPAATNGGPLPGRVEPSVDLLSGDFNSPKAETSLALVPLGEQQPNPPASDQNALVLFDMFSDGNNASNPANPPPINPGGQPPHPHASQFQQQQPLPQQQQQPNVHSPQAGLYPNGNVMNMGSPNYEQSIYMQGPGSAWNGQTSPQQQQQPHSPGYGSQTGSLPPPPWEAQSSDDGSPVSGSHYPHPMQVTTQVIVSHGLGGHPQGPQSMGNEVVGIGMYIQPITSGQMSNMNSHVNPNHQLGMPMPPQIPGMQNMGMPTPPQIPGMQNMGMSTPPQHLQHPQANQMTQPYYPQQMYGNHNQYNPGYGYGHGQPQVPQYLEQQMYGLSVRDDMSMSNSSSQASALSYVPPMKPANKPEDKLFGDLVDIAKFKPGKSTPGRAGSILESKDRPQSTFHRYPLRLRLRRFILCGIFQLPRARFWTTNRSYWRFFFGTGCSLSAGNFAGLRILGLKLLVLSGRIYNAGLKSKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGILLIDCVSVFRKPSAFGRCPRISINGKDVHKACCHAQKGLIFHCFLFAIHLNLTLLLSRRRLQNVSKSRQQNDLLRKKFCGYVDGWLQFSKTREGYFPAKDEKCLASNEMTCVFPLSPIYTIISFATAKDIWETISHLDSQDDSPPFYQLQHEEHALAYG 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23172210 23188398 - CaPI482276_08g016900.1 Cam08g1690 133741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1690 1038 SMART VHS_2 2 134 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1690 1038 Gene3D Ubiquitin Conjugating Enzyme 773 891 IPR016135 -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 142 184 - -
Cam08g1690 1038 CDD UBCc 791 876 IPR000608 -
Cam08g1690 1038 SUPERFAMILY UBC-like 774 888 IPR016135 -
Cam08g1690 1038 SMART ubc_7 760 907 - -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 297 313 - -
Cam08g1690 1038 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 268 313 - -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 384 509 - -
Cam08g1690 1038 Gene3D - 1 148 IPR008942 -
Cam08g1690 1038 Gene3D - 184 273 IPR038425 -
Cam08g1690 1038 ProSiteProfiles GAT domain profile. 181 269 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1690 1038 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1690 1038 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 749 907 IPR000608 -
Cam08g1690 1038 CDD VHS 2 132 - -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 268 282 - -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 407 509 - -
Cam08g1690 1038 Pfam VHS domain 3 128 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1690 1038 Pfam GAT domain 196 269 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cam08g1690 1038 CDD GAT_GGA-like_plant 189 267 - -
Cam08g1690 1038 PANTHER TOM1-LIKE PROTEIN 1 705 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cam08g1690 1038 Pfam Ubiquitin-conjugating enzyme 791 878 IPR000608 -
Cam08g1690 1038 MobiDBLite consensus disorder prediction 325 350 - -
Cam08g1690 1038 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 827 843 IPR023313 -
Cam08g1690 1038 FunFam TOM1-like protein 2 183 273 - -
Cam08g1690 1038 FunFam TOM1-like protein 2 1 148 - -
Cam08g1690 1038 SUPERFAMILY GAT-like domain 140 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1690 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1690 Cam-Chr8:23172210 Cam02g1962 Cam-Chr2:32736271 4.60E-20 dispersed
Cam02g1506 Cam-Chr2:28027929 Cam08g1690 Cam-Chr8:23172210 1.40E-30 transposed
Cam04g0409 Cam-Chr4:15421097 Cam08g1690 Cam-Chr8:23172210 8.90E-53 transposed
Cam08g1070 Cam-Chr8:17054585 Cam08g1690 Cam-Chr8:23172210 1.00E-81 transposed
Cam10g2224 Cam-Chr10:35544508 Cam08g1690 Cam-Chr8:23172210 1.10E-74 transposed
Cam11g0849 Cam-Chr11:11222966 Cam08g1690 Cam-Chr8:23172210 1.00E-89 transposed
Cam11g1546 Cam-Chr11:28274027 Cam08g1690 Cam-Chr8:23172210 1.60E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45