Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1740 ATGAAGGAAAATACGTACAAAATAATTCCCTGCCAAGATATTGTACTTCACGGCATTGCATTAGTAGAGAGTTTCAAACCTCTTCCAAGACATTTCAGAAACCCTGGGGTTGGATTTTTGGAGTGGCGAATCGAAACAATGCTGAGGAAGAGAACAAGGTCAGTTCAGAAAGATCAATACAAAATGAATCAGATGAATGTCCCTTGTTCTGGTTCTGAGCTCCACCCCAAATGTAGCTCTATTTTCAAAAGATCTCACTTGTTTACTGGGTTGTCTCCTAAAGGTTTAGATTCTGATTCAGCCAAAAGTCCAACTTCCCCTCTGGATTTTTGGGTTTTATCAAGTTTAGGTAACCCTCTTAGATCTCCTAGGTCATCATCCAATGAGGGGCATAGAAGGAACTGGGATTCTAGTAAAGTAGGGCTGAGCATTATAGATTCTTTAAATGATGATGATAGTAAACTATTTGGAAAAGTTCTTCGATCGTCGGATAGTAAGACTGCTCTCTGTGGACCTCGAAGTGTGGCCAAGAAATCGAATTGTCCATCACAGGCAAATCTTATCCAGGGGCCTAAATCCTTGCCTAAAAACTATGCAATGGTACCAAAGACCAAAACTTCCATTGAAGAGGGAAACTCTGATGTAATTTTTGAAATTGGAGAAACCCCATTAGAATGTGAGCCTTTTGGAAACTACTCTCGTTCTTTTGATTCCTACAGGGCGTTTGCACCTCGATCTGGTTTAACTGGTCACAGCCTCAGTAGTAGTACTGCTACTGAGAGCGTTGCTTCTCCTCGGTTAGCTGAAGAGCCTCGAGTGTCAGAAAAATGTCTGTTCACAAAACCGTGTTTGATTTCTTTAGGCATATCCTGTGACAATGGATCTAAGAGGCCTCTCTCAGCAAGTGAGATTGAGCTGTCTGAGGATTATACATGTGTAATTTCGCATGGTCCGAACCCGAAAACTACTCATATTTATGGTGACTGCATTTTAGAATGTCACTCTAATTCTTTGAGCTCTTCTTCCGAGAATGAAATGAAGGAGATGGGCTTTCCTCATCCTCTTAAAAGCTTGAATATCTCCACTTCATATTCCTTAACTGACTTCTTAAGCTTCTGCTACTCCTGTCACAAGAAACTGGAAGAGGGAAAAGACATCTACATTTACAGGGGGGAGAAAGCCTTCTGTAGTCTAACATGCCGTTCTCAGGAGATATTGATGGACGAAGAACTCGAGAAATCCATTGACAAAACCTCCGAAAGTTCTCCCAAGTCCAGTGCTGACCATGATGAGGACCTTTTTGAAACCAGCATTGGTGGCTTTGCTTAA 1329 41.61 MKENTYKIIPCQDIVLHGIALVESFKPLPRHFRNPGVGFLEWRIETMLRKRTRSVQKDQYKMNQMNVPCSGSELHPKCSSIFKRSHLFTGLSPKGLDSDSAKSPTSPLDFWVLSSLGNPLRSPRSSSNEGHRRNWDSSKVGLSIIDSLNDDDSKLFGKVLRSSDSKTALCGPRSVAKKSNCPSQANLIQGPKSLPKNYAMVPKTKTSIEEGNSDVIFEIGETPLECEPFGNYSRSFDSYRAFAPRSGLTGHSLSSSTATESVASPRLAEEPRVSEKCLFTKPCLISLGISCDNGSKRPLSASEIELSEDYTCVISHGPNPKTTHIYGDCILECHSNSLSSSSENEMKEMGFPHPLKSLNISTSYSLTDFLSFCYSCHKKLEEGKDIYIYRGEKAFCSLTCRSQEILMDEELEKSIDKTSESSPKSSADHDEDLFETSIGGFA 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23673720 23675967 + CaPI482276_08g017400.1 Cam08g1740 133791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1740 442 MobiDBLite consensus disorder prediction 411 442 - -
Cam08g1740 442 MobiDBLite consensus disorder prediction 411 435 - -
Cam08g1740 442 ProSiteProfiles Zinc finger FLZ-type profile. 368 412 IPR007650 -
Cam08g1740 442 PANTHER FCS-LIKE ZINC FINGER 11 47 439 IPR044585 -
Cam08g1740 442 Pfam zinc-finger of the FCS-type, C2-C2 365 410 IPR007650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1740 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0633 Cam-Chr6:8554058 Cam08g1740 Cam-Chr8:23673720 1.30E-33 dispersed
Cam08g1740 Cam-Chr8:23673720 Cam09g0699 Cam-Chr9:6955756 7.40E-20 dispersed
Cam11g1158 Cam-Chr11:22745790 Cam08g1740 Cam-Chr8:23673720 6.70E-12 transposed
Cam05g1891 Cam-Chr5:27837255 Cam08g1740 Cam-Chr8:23673720 2.20E-73 wgd
Cam07g1266 Cam-Chr7:27015068 Cam08g1740 Cam-Chr8:23673720 5.40E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g390 . . Bda01g00719 . . . . Bma01g02147 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1741 . . . . Chy04g00329 Cme03g01673 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01282 Cam08g1740 Cec08g1322 Cco08g1443 Clacu08g1437 . Cre08g1224 Lsi08g01145 . . Cme04g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007053 2 1 0 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37