Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1742 ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCAGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCATTGCAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGCTGGACAATAGGCGTGCATGGACGCAACAGCCTGTTGGAACAGAACATGTCACTGTGAGTGCTGGCAAATGCCTGACTTATCGGTTGAATAATTTGGGCAATTTGTCAAATAGCTGGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAGTATCTAAGCAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCGTGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAACGCATTGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAATAGCACTCTTTATCGGTCTCCAGCAGGATGGAATGCCTTAAATGATAGATGTAAAGAAAGAATCCATATCAAGAGCATCTCATTAGGAATTTGGAAGTGGATATTTTAA 1305 42.61 MAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRLDNRRAWTQQPVGTEHVTVSAGKCLTYRLNNLGNLSNSWIDENMDDTLANVEGAQGALLKYLSSISSNRRKIWILVKYNVDNVSVRVYAFNFSSNFGNALLKNSNASNYYSLNSTLYRSPAGWNALNDRCKERIHIKSISLGIWKWIF 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23691801 23696688 + CaPI482276_08g017420.1 Cam08g1742 133793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1742 434 MobiDBLite consensus disorder prediction 170 190 - -
Cam08g1742 434 PANTHER SYNTAXIN 54 361 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam08g1742 434 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 289 IPR000727 -
Cam08g1742 434 SMART tSNARE_6 241 306 IPR000727 -
Cam08g1742 434 MobiDBLite consensus disorder prediction 24 46 - -
Cam08g1742 434 CDD SNARE_syntaxin5 249 363 - -
Cam08g1742 434 MobiDBLite consensus disorder prediction 209 242 - -
Cam08g1742 434 Gene3D - 50 296 - -
Cam08g1742 434 MobiDBLite consensus disorder prediction 168 242 - -
Cam08g1742 434 Pfam SNARE domain 326 362 IPR000727 -
Cam08g1742 434 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Cam08g1742 434 SUPERFAMILY t-snare proteins 52 289 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0410 Cam-Chr7:5438241 Cam08g1742 Cam-Chr8:23691801 2.50E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1742 K08490 - csv:101203633 511.916