Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1746 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAAAATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAGTTCAAATGGCTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACCCGAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATCCTCTTCAATCCAGCCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTTTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCCGCATCCTGCCCCATCTGCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTATTGGTGGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACATCAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGGGATGATAGAGAAAACAACTCCGGGGCTGGTGATGGAGGAGGGGTTGTGGCTGCTGGGACTGAAAAGGAACGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCACACTTTTTCCACAAGGACTGTGTAGATAAATGGTTGAAGATCAATGCCTTGTGCCCGCTTTGCAAAACCGAGGTTGGCGAGAGTATCATCAACTCTCTTGAGGGGACAAACAGACAACAACAGGGTGATTAG 1278 43.74 MDVPSVELNCESEGDSYPLLMARPENSNSSEHIIDITGTGDSAPSSLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDPLQSSQNSSRINVPAGPFSLSVSRASEGEELPHPAPSARGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGDGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIINSLEGTNRQQQGD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23707391 23710497 - CaPI482276_08g017460.1 Cam08g1746 133797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1746 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Cam08g1746 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cam08g1746 425 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Cam08g1746 425 FunFam E3 ubiquitin-protein ligase 346 412 - -
Cam08g1746 425 MobiDBLite consensus disorder prediction 1 96 - -
Cam08g1746 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cam08g1746 425 Pfam Ring finger domain 363 404 IPR001841 -
Cam08g1746 425 SUPERFAMILY RING/U-box 355 410 - -
Cam08g1746 425 SMART ring_2 363 403 IPR001841 -
Cam08g1746 425 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1746 Cam-Chr8:23707391 Cam09g2180 Cam-Chr9:36313536 5.80E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1746 - - - 0.0