Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1748 ATGATATTTATATGTCTGTTCGGTAGGCGACTCGTTCAAAAAAACTCCATCTCCTTCCCGCTCCTTCTCCCCGCTCCTCCGCCCTGTTCCTCACCCGCTAGCTCCGTCGCCTATGCCCGCCGTCTCATTCCATTTTTATGCACTCAAAGCTATGGCCGACTGGCTGATCGGAGAAAATGTTGGAATGGAGCTTCCAGTGAATGCTCTCTTCGATATGCGGCATTGTCTTGCATTTACGATTACTTGATTTCAATGTTTCCCTGTTCTGTGAACTCTGAAGTTTTTCTTTCTTTGACTGGTTTTTTCTGCGTTGGTTGCTCCTTGCTGCAATATTGTTCTATTGCTGAAAGAAAGAAATTCAGGCTCTGGAGTTATAGCCGTGCATTTGCTTGTCCACACACAACAGCTCTGTTGAATATGATGAAAGAAAAGGTTGCTGTCAGAATCACGCGCTCCCAGTCTAATTCCTCAAGCAGACTAGGAGCTAATTCACCCTCATTGCAACTTTCACTCAAAGAATTGCGCAAACGTGGCCATACAGAAGACTCTGAACTAGCACAACTAGATGGAAGTAATGCTTCCACAACTATTACTGTTGGTGTTCGGCGCAAAAGAAGATCAGTGCTCAAGGATGTTACCAACATGTCCTGTGAGAGTAGTAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATGGAATCACTTGAAGATTCACCCGTTAAAAGGATGGCAGAATCACTAGGTACCTCTCCAGTGATGAGGTCAGACAAACAAGAGACAACACAGGCGAACAAGTTTCAGAGTGTCATAGGATGCAAAAATTGTGCGTTCCCCATGCCTTCAGGATCAAACGACCACCAAATGAAAGTTGAGGCTACGGTTTGTGAGAAATTAAACCATCTCGGTAGTTTGGATGCTATTTCAAACTCAGAAGATCCTCAAGCTTGCACCCTATATGCCCATAATATATATGATACTAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACCGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTCACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTTCAAGGAAACTTGTGTCGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGATTTCTGCCTTCAGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGCATCAACCAAATCAACCATGGAACCTGGCTTTAGAGCATTATACCAATTACAATGTCTCCAAGTTAAGAACTTCAGTACTTGCCTTGGAAGATCTAAGATTGAACTCCACAGGTTGCCCTTTAAACGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCCAACCAGACAGATACCTGA 1782 42.82 MIFICLFGRRLVQKNSISFPLLLPAPPPCSSPASSVAYARRLIPFLCTQSYGRLADRRKCWNGASSECSLRYAALSCIYDYLISMFPCSVNSEVFLSLTGFFCVGCSLLQYCSIAERKKFRLWSYSRAFACPHTTALLNMMKEKVAVRITRSQSNSSSRLGANSPSLQLSLKELRKRGHTEDSELAQLDGSNASTTITVGVRRKRRSVLKDVTNMSCESSNLGCLHASKVQVQEVSQMESLEDSPVKRMAESLGTSPVMRSDKQETTQANKFQSVIGCKNCAFPMPSGSNDHQMKVEATVCEKLNHLGSLDAISNSEDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCCITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASFKETCVEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNLALEHYTNYNVSKLRTSVLALEDLRLNSTGCPLNAVFQKYRQQKFGSVATLTSTKSVLSAFPNQTDT 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23722187 23729341 - CaPI482276_08g017480.1 Cam08g1748 133799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1748 593 FunFam Mitotic cyclin 6 342 442 - -
Cam08g1748 593 Pfam Cyclin, N-terminal domain 329 455 IPR006671 -
Cam08g1748 593 ProSitePatterns Cyclins signature. 359 390 IPR048258 -
Cam08g1748 593 Gene3D - 342 455 - -
Cam08g1748 593 SUPERFAMILY Cyclin-like 456 581 IPR036915 -
Cam08g1748 593 PANTHER CYCLINS 311 567 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam08g1748 593 SMART cyclin_7 461 549 IPR013763 -
Cam08g1748 593 SMART cyclin_7 364 448 IPR013763 -
Cam08g1748 593 FunFam Cyclin A1 444 576 - -
Cam08g1748 593 Gene3D - 329 576 - -
Cam08g1748 593 SMART Cyclin_C_2 457 580 IPR004367 -
Cam08g1748 593 Pfam Cyclin, C-terminal domain 457 578 IPR004367 -
Cam08g1748 593 SUPERFAMILY Cyclin-like 317 454 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1748 Cam-Chr8:23722187 Cam08g2100 Cam-Chr8:26488282 4.40E-68 dispersed
Cam05g1878 Cam-Chr5:27696219 Cam08g1748 Cam-Chr8:23722187 7.60E-111 wgd
Cam08g1748 Cam-Chr8:23722187 Cam09g0235 Cam-Chr9:2993662 1.40E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1748 K06627 - csv:101211578 778.859